Claude Skills by ma-compbio-lab

Use this starter when a task lands in the `Perturb-seq` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Pseudobulk analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to run a deterministic toy bulk RNA-seq differential-expression pass with PyDESeq2 and summarize the ranked genes.

Use this starter when a task lands in the `RNA velocity` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to score marker-gene programs with Scanpy and assign simple cell-type labels on a deterministic toy single-cell matrix.

Use this skill to run a deterministic toy batch-correction pass with Scanpy's ComBat implementation and summarize how much the batch gap shrinks after correction.

Use this skill to compute a deterministic toy diffusion-pseudotime trajectory with Scanpy `tl.dpt`.

Use this skill to run a lightweight Scanpy QC pass on a toy count matrix with the repository-managed Scanpy environment.

Use this skill to run a deterministic toy differential-expression pass with Scanpy and extract top marker genes per group from a small count matrix.

Use this starter when a task lands in the `Spatial transcriptomics` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to build a deterministic Dash dashboard scaffold from toy measurements and inspect the resulting layout, callback, and preview artifacts.

Use this starter when a task lands in the `Figure recreation from papers` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to turn a small tabular dataset into a deterministic publication-style figure and compact fit summary.

Use this skill to build a tiny catalog website with MkDocs from a JSON page specification.

Use this skill to turn a small deterministic TSV into an interactive HTML report with Plotly.

Use this skill to render a small deterministic Jupyter notebook into an HTML report with Quarto.

Use this starter when a task lands in the `Skill browser / mindmap generation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.