Claude Skills by ma-compbio-lab

Use this starter when a task lands in the `Agronomic experiment design` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Crop genomics and breeding` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Disease and stress detection` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Food chemistry and quality modeling` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to generate a tiny synthetic plant image, segment it with `PlantCV`, and summarize simple morphology-style phenotyping measurements.

Use this starter when a task lands in the `Precision agriculture sensing` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Soil / rhizosphere / microbiome analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Yield forecasting` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to search the current ClinicalTrials.gov v2 API for condition or keyword matches when you need official clinical-study metadata. Do not use it for legacy API URLs or offline work.

Use this starter when a task lands in the `EHR preprocessing` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to run a deterministic group fairness audit over a tiny clinical toy cohort with `fairlearn`.

Use this skill to run a deterministic Kaplan-Meier survival analysis over a toy cohort and summarize per-group survival curves.

Use this starter when a task lands in the `Missing-data handling` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Phenotyping` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Privacy-preserving analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Time-series clinical modeling` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to optimize a tiny argon dimer with ASE and summarize the final geometry.

Use this skill to featurize SMILES strings into DeepChem molecular graph objects. Prefer it for local graph-based preprocessing before molecular machine-learning experiments.

Use this starter when a task lands in the `Free-energy workflows` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to assign a simple water force field to a tiny PDB topology with OpenMM and summarize the resulting system.

Use this skill to run a deterministic toy Langevin dynamics simulation in OpenMM and inspect a compact trajectory summary.

Use this skill to run a deterministic OpenMM energy minimization on a tiny toy system. Do not use it for production molecular dynamics or force-field validation.

Use this skill to run a deterministic Psi4 single-point Hartree-Fock energy on a tiny water molecule. Do not use it for production quantum chemistry benchmarking or large basis-set studies.

Use this starter when a task lands in the `QM/MM workflows` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Quantum chemistry setup` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to generate a small deterministic conformer ensemble with RDKit ETKDG and summarize the lowest-energy structures.

Use this starter when a task lands in the `Trajectory analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to search EBI BioSamples for public sample metadata by text query or lightweight filters and return compact summaries.

Use this skill to validate a small CSV or TSV table against a simple Frictionless schema and emit a compact machine-readable error summary.

Use this skill to harmonize small metadata tables with inconsistent column names and categorical labels into one canonical TSV plus a compact JSON summary.

Use this skill to round-trip a small integer matrix through a deterministic `numcodecs` compressor and inspect the encoded payload summary.

Use this skill to convert a small tabular file into Parquet with PyArrow and inspect a deterministic round-trip summary.

Use this skill to package a small local data file into an RO-Crate directory with basic provenance-rich metadata and a compact summary of the generated graph.

Use this skill to generate a deterministic tiny dataset bundle for tests, demos, and smoke fixtures.

Use this skill to convert a small numeric matrix into a chunked, compressed Zarr store and inspect a deterministic summary of its layout.

Use this starter when a task lands in the `ADMET modeling` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Benchmarks and evaluation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to search ChEMBL molecules by keyword and return a compact compound summary. Do not use it for local chemistry calculations or unsupported bulk export.

Use this skill to compute compact DeepChem circular fingerprints from a small set of SMILES strings with the repo-managed DeepChem prefix. Do not use it for model training, docking, or large library screening.

Use this starter when a task lands in the `Molecular generation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `QSAR / property prediction` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to compute compact cheminformatics descriptors from one SMILES string with RDKit. Do not use it for docking, quantum chemistry, or large library screening.

Use this skill to standardize one small-molecule SMILES string with RDKit MolStandardize. It is for local cleanup, salt stripping, uncharging, and tautomer canonicalization, not docking or batch-library processing.

Use this skill to compute Murcko scaffold summaries for a small local molecule set with RDKit. Prefer it for deterministic scaffold grouping and smoke-scale cheminformatics checks.

Use this starter when a task lands in the `Virtual screening` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Climate reanalysis access` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to run a deterministic point-in-polygon join with GeoPandas and summarize the result in compact JSON.

Use this starter when a task lands in the `Physics-informed forecasting` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Raster / vector ingestion` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to generate a tiny toy raster with Rasterio, extract a window, downsample it, and summarize the preprocessing result in compact JSON.