Claude Skills by ma-compbio-lab

Use this starter when a task lands in the `Multi-modal image-omics integration` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Pathology / histology workflows` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Representation learning for scientific images` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to generate a deterministic toy microscopy-like image, segment bright objects with Otsu thresholding, and summarize labeled regions.

Use this skill to extract deterministic morphology and intensity features from a toy image with `scikit-image` `regionprops_table`.

Use this starter when a task lands in the `Generative design for materials` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Laboratory-to-simulation data linkage` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Materials benchmark datasets` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to compute deterministic stoichiometry-style composition features for a short list of formulas with `matminer`.

Use this skill to featurize simple formulas with Matminer and fit a deterministic toy regression model for materials-property prediction.

Use this skill to featurize a small composition table with `matminer` and fit a deterministic toy property predictor.

Use this starter when a task lands in the `Phase / stability analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to parse one crystal structure file with `pymatgen` and return a deterministic structural summary with lattice, composition, density, and symmetry metadata.

Use this starter when a task lands in the `Surrogate models for simulation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to scan a tiny resource registry sample for near-duplicate text records with MinHash LSH.

Use this starter when a task lands in the `Deprecation / migration` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Documentation quality improvement` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Freshness audits` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to build a tiny disposable repository and run deterministic local `pre-commit` hooks as a regression-testing starter.

Use this skill to scan a tiny skill inventory for near-duplicate names with RapidFuzz.

Use this skill to check a selected subset of registry resource URLs and summarize which entries are reachable.

Use this starter when a task lands in the `Taxonomy refinement` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Differential metabolomics` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Feature annotation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Lipidomics` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to search MetaboLights studies and resolve a compact summary for each matched accession through the official JSON API.

Use this starter when a task lands in the `Metabolomics preprocessing` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Microbiome analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Multi-omics integration` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Brain atlas integration` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Computational psychiatry and clinical neuroinformatics` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to build a tiny EEG connectivity graph with `mne` and `mne-connectivity`.

Use this skill to create a tiny synthetic EEG recording with `MNE-Python`, apply a simple band-pass filter, and summarize the preprocessing effect.

Use this starter when a task lands in the `Multimodal neuroimaging fusion` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Neural decoding and encoding models` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to generate or load a small NIfTI image with `nibabel` and summarize the core shape, affine, zoom, and unit metadata.

Use this skill to build a tiny toy fMRI-like timeseries matrix, regress out confounds with `nilearn.signal.clean`, and summarize the denoising effect.

Use this starter when a task lands in the `Spike sorting and electrophysiology` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to generate or load a tiny FITS image with `astropy.io.fits` and summarize the core image and header metadata.

Use this starter when a task lands in the `Cosmology and sky-survey analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Differentiable simulation` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `High-energy / detector data analysis` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Inverse problems and scientific reconstruction` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Operator learning and surrogate physics models` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `PDE / CFD simulation workflows` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Scientific time-series anomaly detection` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Spectroscopy and signal extraction` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Symbolic discovery of physical laws` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this starter when a task lands in the `Differential proteomics` frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

Use this skill to fetch a compact accession summary from the EBI Proteins API. Do not use it for bulk downloads, unsupported endpoints, or full protein annotation export.