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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- R6 Reference Semantics ComparisonUse when you need to understand or validate whether calling filter_mispicked_ions()Votes: 0GitHub stars: 16
- Random Access And Sequential Iteration Pattern ImplementationUse when when you need to support fast, non-sequential lookups (e.Votes: 0GitHub stars: 16
- Random Access Seekable File Interface DesignUse when you have a large mzML file or text corpus (e.g., Moby Dick,Votes: 0GitHub stars: 16
- Random Forest Classification For Metabolite PredictionUse when you have a metabolomics count table (rows=metabolites, columns=samples)Votes: 0GitHub stars: 16
- Random Forest Regression TuningUse when your MetaboSet object contains missing values (marked as NA)Votes: 0GitHub stars: 16
- Random Missing Value MaskingUse when preparing ion image data for contrastive learning in mass spectrometryVotes: 0GitHub stars: 16
- Random Walk Graph Propagation'Use when you have: (1) a set of spectral library matches (seed identities)Votes: 0GitHub stars: 16
- Rank Performance Metric ComputationUse when when you have predictions from one or more metabolite annotationVotes: 0GitHub stars: 16
- Ranked Annotation PrioritizationUse when you have completed cluster-based filtering of KEGG candidateVotes: 0GitHub stars: 16
- Ranked Candidate PrioritizationUse when you have a feature quantification table (m/z, retention time,Votes: 0GitHub stars: 16
- Ranked Result Extraction And DisplayUse when after running annotateRC on LC–MS AIF data when you need toVotes: 0GitHub stars: 16
- Ranking Metric Computation For Spectral PredictionsUse when after generating ranked predictions of chemical formulas orVotes: 0GitHub stars: 16
- Ranking Performance EvaluationUse when after running retention-order prediction experiments on a testVotes: 0GitHub stars: 16
- Ranking Task Loss OptimizationUse when you have multiple pre-trained neural network models (e.g., MLPVotes: 0GitHub stars: 16
- Rapid Spectrum Retrieval OptimizationUse when you have a large collection of mass spectrometry spectra (m/zVotes: 0GitHub stars: 16
- Raw Chromatography Data ParsingUse when you have raw GC-MS output files (vendor formats or netCDF) fromVotes: 0GitHub stars: 16
- Raw Data Throughput BenchmarkingUse when when you have a raw mass spectrometry file (e.g., Thermo OrbitrapVotes: 0GitHub stars: 16
- Raw File Data Extraction Via ApiUse when you have a Thermo Fisher Scientific .raw file (e.g., Q ExactiveVotes: 0GitHub stars: 16
- Raw File Format ParsingUse when you have native Thermo Fisher RAW files and need to recoverVotes: 0GitHub stars: 16
- Raw File Header ExtractionUse when beginning an LC-MS data analysis pipeline and you need to rapidlyVotes: 0GitHub stars: 16
- Raw File Routing And QueuingUse when you have collected raw MS files via an uploader tool and needVotes: 0GitHub stars: 16
- Raw Mass Spectrometry Data IngestionUse when you have raw mass spectrometry data in mzML, abf (Reifycs),Votes: 0GitHub stars: 16
- Raw Ms Data Format ConversionUse when you have raw UPLC-HRMS data from ThermoFisher or Agilent instrumentsVotes: 0GitHub stars: 16
- Raw Spectral Data Import And PreprocessingUse when you have raw metabolomics data in mzML or mzXML format and needVotes: 0GitHub stars: 16
- Raw Spectral Data Input Handling Without Peak PickingUse when when you have raw mass spectrometry imaging data (full m/z profilesVotes: 0GitHub stars: 16
- Raw Spectral Data ReadingUse when you have Thermo Orbitrap .raw files and need to extract specificVotes: 0GitHub stars: 16
- Raw Vendor File Format HandlingUse when you have collected imaging mass spectrometry data in vendor-specificVotes: 0GitHub stars: 16
- Rawrr Spectral Data RetrievalUse when you have Thermo Orbitrap .raw files and need to access raw spectralVotes: 0GitHub stars: 16
- Rc Object Construction And ValidationUse when after feature detection and alignment (XCMS or equivalent),Votes: 0GitHub stars: 16
- Rdkit Molecular Descriptor ComputationUse when when annotating .msp mass spectrometry files with chemical structureVotes: 0GitHub stars: 16
- Rdkit Molecular FeaturizationUse when you have molecular structure data (SMILES strings or MOL files)Votes: 0GitHub stars: 16
- Rdkit Molecular Property ExtractionUse when when you have a set of compounds represented as SMILES stringsVotes: 0GitHub stars: 16
- Reactant Ion Peak ExclusionUse when when performing peak detection on Gas Chromatography–Ion MobilityVotes: 0GitHub stars: 16
- Reaction Filtering By Substrate CompletenessUse when you have loaded intracellular metabolomics data (LC-MS normalizedVotes: 0GitHub stars: 16
- Reaction Flux Concordance AnalysisUse when you have computed RAS (Reaction Activity Scores) from transcriptomicsVotes: 0GitHub stars: 16
- Reaction Pathway Assignment And PropagationUse when you have detected and clustered unknown MS features from untargetedVotes: 0GitHub stars: 16
- Reaction Pathway InterpolationUse when after CREST (version >= 3.0.2) has identified an ensemble ofVotes: 0GitHub stars: 16
- Reaction Propensity Score ComputationUse when you have measured intracellular metabolite abundances (LC-MSVotes: 0GitHub stars: 16
- Reactomics Annotation And ClusteringUse when you have a formula-assigned dataset from FT-ICR MS or otherVotes: 0GitHub stars: 16
- Realtime Alert DispatchUse when a QC check fails during an active LC-MS instrument run and youVotes: 0GitHub stars: 16
- Receiver Operating Characteristic Curve InterpretationUse when you have a trained NeatMS neural network model and labelledVotes: 0GitHub stars: 16
- Receiver Operator Characteristic Curve GenerationUse when when you have computed similarity scores (cosine, modified cosine,Votes: 0GitHub stars: 16
- Reconstruction Algorithm ImplementationUse when when you have raw or preprocessed mass spectrometry data (featureVotes: 0GitHub stars: 16
- Record Filtering By Field ValueUse when when you have a table of JSON records and need to select a subsetVotes: 0GitHub stars: 16
- Record Grouping And CollationUse when you have multiple rows in a table that describe the same logicalVotes: 0GitHub stars: 16
- Recursive Algorithm ImplementationUse when after peak detection on LC/HRMS data (mzXML, mzML, netCDF formats)Votes: 0GitHub stars: 16
- Recursive Descent Parser ConstructionUse when you have a formal grammar specification for a domain-specificVotes: 0GitHub stars: 16
- Recursive Propagation Algorithm DevelopmentUse when when you have constructed a two-layer metabolite annotationVotes: 0GitHub stars: 16
- Redundant Feature Identification LcmsUse when after alignment of two or more same-method nontargeted LCMSVotes: 0GitHub stars: 16
- Redundant Node Removal And Edge ClassificationUse when after network partitioning, when you have identified connectedVotes: 0GitHub stars: 16