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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Python Module Integration And Pipeline ExtensionUse when you have developed new scoring logic (e.g., average inchikeyVotes: 0GitHub stars: 16
- Python Object Serialization DeserializationUse when when you have completed spectral data preprocessing in JupyterVotes: 0GitHub stars: 16
- Python Package Dependency InstallationUse when you need to enable optional modules in Pyteomics that dependVotes: 0GitHub stars: 16
- Python Package Installation And Dependency ManagementUse when when setting up a new computational environment for tandem MS/MSVotes: 0GitHub stars: 16
- Python Package IntegrationUse when when you have LC-MS/MS data in MZmine-generated MGF and CSVVotes: 0GitHub stars: 16
- Python Package Migration And RefactoringUse when you have a mature Python package (e.g., Mummichog 2.x) thatVotes: 0GitHub stars: 16
- Python R Data Structure MappingUse when when you have mass spectrometry data in R's Spectra format butVotes: 0GitHub stars: 16
- Python Random Access ImplementationUse when when you have an indexed gzip file (mzML.gz with internal indexVotes: 0GitHub stars: 16
- Python Sqlite Migration And EtlUse when you have MS/MS spectral library data currently stored in multipleVotes: 0GitHub stars: 16
- Python Workflow Execution And OrchestrationUse when you have raw LC/MS data in mzML format and need to execute aVotes: 0GitHub stars: 16
- Python Workflow ScriptingUse when you have raw mass spectrometry spectral data in common formatsVotes: 0GitHub stars: 16
- Pytorch Inference ExecutionUse when you have a pretrained PyTorch model with released weights (e.g.,Votes: 0GitHub stars: 16
- Pytorch Model ImplementationUse when you have preprocessed MS/MS spectral data (m/z and intensityVotes: 0GitHub stars: 16
- Pytorch Model Loading And Forward PassUse when when you have a pre-trained PyTorch model checkpoint (e.g.,Votes: 0GitHub stars: 16
- Pytorch Model Training And OptimizationUse when when you have preprocessed molecular graph representations (fromVotes: 0GitHub stars: 16
- Pytorch Module CompositionUse when when you need to extract both local spatial patterns and globalVotes: 0GitHub stars: 16
- Pytorch Module DevelopmentUse when when constructing a composite loss function for contrastiveVotes: 0GitHub stars: 16
- Pytorch Or Tensorflow Model DefinitionUse when when you have molecular structure inputs (SMILES strings, molecularVotes: 0GitHub stars: 16
- Pytorch State Dict Checkpoint ManagementUse when when training a multi-component deep learning model where someVotes: 0GitHub stars: 16
- Pytorch Tensor Shape ValidationUse when after implementing a transformer encoder backbone with maskingVotes: 0GitHub stars: 16
- Pytorch Transformer Backbone InstantiationUse when when building a graph-based molecular property prediction modelVotes: 0GitHub stars: 16
- Q Value Based Confidence FilteringUse when after loading feature identification results (e.g., from OpenSwathVotes: 0GitHub stars: 16
- Qc Coefficient Of Variation CalculationUse when after extracting NMR spectra and designating replicate QC samplesVotes: 0GitHub stars: 16
- Qc Failure Event DetectionUse when rapid QC-MS is actively monitoring LC-MS data acquisition andVotes: 0GitHub stars: 16
- Qc Metric Visualization Across SamplesUse when you have processed LC-MS peak detection output or feature tablesVotes: 0GitHub stars: 16
- Qc Reference Chromatogram ExtractionUse when when processing a batch of LC-MS samples in mzML or mzXML formatVotes: 0GitHub stars: 16
- Qc Replicate Identification And GroupingUse when you have a QC-annotated LC-MS feature table (CSV or data frameVotes: 0GitHub stars: 16
- Qc Sample Batch Drift CorrectionUse when you have a QC-annotated feature table (samples × features withVotes: 0GitHub stars: 16
- Qc Sample Classification LabelingUse when when loading multiple LC-MS runs (mzML files) into an MsExperimentVotes: 0GitHub stars: 16
- Qc Sample Quality AssessmentUse when after drift correction and before imputation when you have LC-MSVotes: 0GitHub stars: 16
- Qc Sample Reliability EvaluationUse when after drift correction has been applied to your LC-MS peak tableVotes: 0GitHub stars: 16
- Qc Sample Type ClassificationUse when when constructing a sample list from an Excel template for LC/GC-MSVotes: 0GitHub stars: 16
- Qc Summary Data ExtractionUse when after applying one or more mpactr filters (filter_mispicked_ions,Votes: 0GitHub stars: 16
- Qc Summary Table ExtractionUse when after applying one or more mpactr filters (filter_mispicked_ions,Votes: 0GitHub stars: 16
- Qc Type Color Marker AssignmentUse when configuring a new injection-plate design template in InjectionDesignVotes: 0GitHub stars: 16
- Qiime2 Artifact HandlingUse when you have raw mass-spectrometry files (MGF, BIOM, mzXML, mzML)Votes: 0GitHub stars: 16
- Qiime2 Artifact InspectionUse when you need to verify that a QIIME 2 artifact (e.g., a ChemicalVotes: 0GitHub stars: 16
- Qm Output Parsing And AggregationUse when you have completed parallel QUICK quantum calculations on multipleVotes: 0GitHub stars: 16
- Qr Code Generation And EmbeddingUse when you need to publish metabolomics spectra in static media (PDF,Votes: 0GitHub stars: 16
- Quality Assurance Contamination RemovalUse when you have a feature quantification table exported from MZmine3Votes: 0GitHub stars: 16
- Quality Control Merge VerificationUse when after performing an inner or left join operation to combineVotes: 0GitHub stars: 16
- Quality Control Metric ComputationUse when after feature integration and imputation when you have QC-annotatedVotes: 0GitHub stars: 16
- Quality Control Metric Distribution AnalysisUse when after composite-map peak detection has produced an unfilteredVotes: 0GitHub stars: 16
- Quality Control Metric EvaluationUse when you have measured IM-MS lipidomics data spiked with U13C labeledVotes: 0GitHub stars: 16
- Quality Control Report GenerationUse when after completing doAnalysis on an mzQuality SummarizedExperimentVotes: 0GitHub stars: 16
- Quality Control Sample AggregationUse when you have a feature intensity matrix (peak vector) and a correspondingVotes: 0GitHub stars: 16
- Quality Control Sample DesignationUse when when importing a new batch of centroided mzML or mzXML LC-MSVotes: 0GitHub stars: 16
- Quality Control Sample Identification LcmsUse when when you have XCMS-preprocessed LC-MS metabolomics data withVotes: 0GitHub stars: 16
- Quality Control Sample Metadata ExtractionUse when you have txt files exported from Sciex MultiQuant (>v3.0.Votes: 0GitHub stars: 16
- Quality Control Sample Outlier DetectionUse when you have a SummarizedExperiment object containing pooled qualityVotes: 0GitHub stars: 16