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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Poisson Noise GenerationUse when when preparing augmented variants of ion images (single-channelVotes: 0GitHub stars: 16
- Poisson Noise Injection For ImagingUse when augmenting mass spectrometry ion images for contrastive learning,Votes: 0GitHub stars: 16
- Poisson Noise Injection SpectralUse when augmenting mass spectrometry ion images for contrastive learning,Votes: 0GitHub stars: 16
- Polarity Aware Data FilteringUse when when performing targeted peak detection on LC-MS data whereVotes: 0GitHub stars: 16
- Polarity Based Compound FilteringUse when you have a multi-polarity compound target list (e.g., a .xlsxVotes: 0GitHub stars: 16
- Polarity Filtering In Targeted MetabolomicsUse when when working with targeted LC–MS metabolomics or lipidomicsVotes: 0GitHub stars: 16
- Polarity Mode Filtering LcmsUse when you have a comprehensive target list (containing compounds fromVotes: 0GitHub stars: 16
- Polarizability Tensor ExtractionUse when after ASE-ANI has filtered conformers to remove high-energyVotes: 0GitHub stars: 16
- Polymorphic Method Dispatch On Plot KindUse when when building a plotting library that must support multipleVotes: 0GitHub stars: 16
- Polynomial Regression Quality AssessmentUse when after fitting a polynomial calibration model to tunemix referenceVotes: 0GitHub stars: 16
- Positional Encoding For Spectral SequencesUse when preparing mass spectrum input tensors for transformer encoderVotes: 0GitHub stars: 16
- Positive Mode Ionization AnalysisUse when you have LC-MS metabolomics data in positive ionization modeVotes: 0GitHub stars: 16
- Positive Negative Class BalancingUse when when training a formula rescoring model on MS/MS spectra whereVotes: 0GitHub stars: 16
- Post Hoc Model InterpretabilityUse when after training a GNN model on molecular structures with continuousVotes: 0GitHub stars: 16
- Post Translational Modification DetectionUse when when you have tandem mass spectrometry data (LC-MS/MS in MGF,Votes: 0GitHub stars: 16
- Post Translational Modification Pattern RecognitionUse when you have centroided LC-MS/MS spectra (in MGF, mzXML, mzML, orVotes: 0GitHub stars: 16
- Ppb Level Marker Detection And Sensitivity AssessmentUse when you have raw GC–MS or LC–MS data in two-dimensional m/z vs retentionVotes: 0GitHub stars: 16
- Ppm Error Tolerance FilteringUse when after molecular formula assignment has been performed on FT-ICRVotes: 0GitHub stars: 16
- Ppm Error Validation In MetabolomicsUse when when annotating m/z features from Cardinal MSImagingExperimentVotes: 0GitHub stars: 16
- Ppm Mass Accuracy FilteringUse when when processing imzML/ibd Imaging Mass Spectrometry datasetsVotes: 0GitHub stars: 16
- Ppm Tolerance Filtering In Mass SpectrometryUse when when you have assigned molecular formulas to m/z peaks or computedVotes: 0GitHub stars: 16
- Ppm Tolerance Scoring And RankingUse when you have extracted a list of candidate molecular formulae forVotes: 0GitHub stars: 16
- Ppm Tolerance Window AdjustmentUse when a mass spectrum calibration procedure initialized with a narrowVotes: 0GitHub stars: 16
- Pre Analytical Delay Effect QuantificationUse when you have uploaded a pre-analytical data table containing sampleVotes: 0GitHub stars: 16
- Pre Analytical Delay StratificationUse when when you have NMR metabolite measurements paired with documentedVotes: 0GitHub stars: 16
- Pre Trained Model Fine TuningUse when you have a small training dataset for molecular property predictionVotes: 0GitHub stars: 16
- Precision Recall Curve Generation And InterpretationUse when you have computed spectral similarity scores from multiple methodsVotes: 0GitHub stars: 16
- Precision Recall Curve Generation For Ranking TasksUse when when you have computed similarity scores (e.g., MS2DeepScore,Votes: 0GitHub stars: 16
- Precision Recall Optimization In Spectral AnnotationUse when you have extracted fragmentation patterns from a collectionVotes: 0GitHub stars: 16
- Precursor And Noise FilteringUse when you have loaded raw tandem MS spectra (in MGF, mzML, or similarVotes: 0GitHub stars: 16
- Precursor Fragment Ion PairingUse when you have raw LC-MS/MS data files (mzML/mzXML format from Thermo,Votes: 0GitHub stars: 16
- Precursor Fragment Pairing For MrmUse when when designing a targeted lipidomics experiment and you haveVotes: 0GitHub stars: 16
- Precursor Ion Chromatogram ExtractionUse when you have raw DIA mass spectrometry data files (.raw, .d, orVotes: 0GitHub stars: 16
- Precursor Ion Isolation WindowingUse when processing SWATH-MS (Sequential Windowed Acquisition of allVotes: 0GitHub stars: 16
- Precursor List Formatting For DdaUse when you have generated a lipid spectral library (lipid identities,Votes: 0GitHub stars: 16
- Precursor M Z Based Filtering'Use when you have an unknown MS/MS query spectrum with a known or measuredVotes: 0GitHub stars: 16
- Precursor Mass CalculationUse when when you have a compound's SMILES string or molecular formulaVotes: 0GitHub stars: 16
- Precursor Mass Difference CalculationUse when when comparing two MS/MS spectra using modified cosine similarityVotes: 0GitHub stars: 16
- Precursor Mass FilteringUse when after retrieving top-scoring library candidates from a fullVotes: 0GitHub stars: 16
- Precursor Mass Neutral Loss CalculationUse when when analyzing tandem mass spectra (MS/MS data) and you wantVotes: 0GitHub stars: 16
- Precursor Mass Tolerance FilteringUse when after cosine similarity or dot-product scoring of experimentalVotes: 0GitHub stars: 16
- Precursor Mz Window FilteringUse when when preparing augmented training data for Siamese or contrastiveVotes: 0GitHub stars: 16
- Precursor Peak Removal Mass ToleranceUse when after loading an MsmsSpectrum object but before intensity filteringVotes: 0GitHub stars: 16
- Precursor Product Mass PairingUse when you have centroided MS2 spectra from data-dependent acquisitionVotes: 0GitHub stars: 16
- Precursor Product Mz ParsingUse when you have raw MRM sample files from a LC-MS/MS instrument andVotes: 0GitHub stars: 16
- Precursor Region Handling And M Z Tolerance ManagementUse when when computing entropy_similarity() between experimental (noisyVotes: 0GitHub stars: 16
- Prefix Stripping And Case StandardizationUse when valueMatcher.series_match has detected database-ID values (HMDBVotes: 0GitHub stars: 16
- Preprocessing Pipeline Parameter OptimizationUse when you have raw TOF-MS or IM-MS data in Agilent MassHunter (.d)Votes: 0GitHub stars: 16
- Pretrained Model Weight LoadingUse when you have a pretrained PyTorch model checkpoint (e.g., JESTRVotes: 0GitHub stars: 16
- Principal Component Analysis InterpretationUse when when you have normalized MS1 ion intensity features from multipleVotes: 0GitHub stars: 16