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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Principal Coordinate Analysis InterpretationUse when when you have computed pairwise distances between MS2 fingerprintVotes: 0GitHub stars: 16
- Prm Acquisition Event IdentificationUse when you have a Thermo Fisher Scientific .raw file containing PRMVotes: 0GitHub stars: 16
- Probabilistic Classification Network ConstructionUse when when you have raw mass spectrometry imaging data tensors andVotes: 0GitHub stars: 16
- Probabilistic Modeling Convergence AssessmentUse when during the LDA training phase when you need to decide whetherVotes: 0GitHub stars: 16
- Probabilistic Topic Modeling Mass SpectrometryUse when you have preprocessed tandem mass spectrometry spectra convertedVotes: 0GitHub stars: 16
- Probability Prediction Metric ComputationUse when after running ModiFinder's probability generation on a knownVotes: 0GitHub stars: 16
- Probability Product Kernel DenoisingUse when you have raw MS2 spectra (m/z and intensity pairs) that youVotes: 0GitHub stars: 16
- Probability Threshold CalibrationUse when after training or loading a NeatMS neural network model, applyVotes: 0GitHub stars: 16
- Probability Threshold Tuning For Chemical DetectionUse when you have a trained NeatMS neural network model (.h5 format)Votes: 0GitHub stars: 16
- Proforma 2 0 Peptidoform ParsingUse when you have a ProForma 2.0 peptidoform string (e.Votes: 0GitHub stars: 16
- Proforma Notation ParsingUse when when peptide identifications from a search engine (MaxQuant,Votes: 0GitHub stars: 16
- Proforma Peptidoform ParsingUse when when you have a ProForma 2.0–formatted peptide string with PSI-MODVotes: 0GitHub stars: 16
- Project Metadata IntegrationUse when a paired omics project record contains a genome identifier (e.g.,Votes: 0GitHub stars: 16
- Project Metadata ValidationUse when when a user uploads a JSON project document to the Pairing OmicsVotes: 0GitHub stars: 16
- Projected Area ComputationUse when you have 3D optimized molecular conformers (RDKit mol objectsVotes: 0GitHub stars: 16
- Prominence Controlled Peak SelectionUse when after initial peak detection on composite mass tracks via localVotes: 0GitHub stars: 16
- Proprietary Data Structure MappingUse when you have received raw mass spectrometry data in one of fourVotes: 0GitHub stars: 16
- Proteome Dataset Handling'Use when you have a collection of MS/MS spectra in MGF format and needVotes: 0GitHub stars: 16
- Proteomics Data Format ConversionUse when you have vendor raw files (e.g., .raw from Thermo, .d from Agilent,Votes: 0GitHub stars: 16
- Proteomics Data Structure DesignUse when when building a mass-spectrometry analysis pipeline that mustVotes: 0GitHub stars: 16
- Proteomics Output Record ParsingUse when after the Proteomics_Data_Processor tool has completed analysisVotes: 0GitHub stars: 16
- Protonation State AssignmentUse when you have SMILES-encoded molecular structures and need to modelVotes: 0GitHub stars: 16
- Pseudo Data Pair ConstructionUse when when you have a raw list of SMILES strings but lack sufficientVotes: 0GitHub stars: 16
- Pseudo Ms Ms Spectra Ranking And CurationUse when after executing annotateRC to match six or more lipidomics/metabolomicsVotes: 0GitHub stars: 16
- Psm Annotation And Ion MatchingUse when when you have an MS2 scan with observed peak data (m/z, intensity,Votes: 0GitHub stars: 16
- Psm Spectrum Identifier Regex ExtractionUse when when you have PSM identifications from a search engine (e.Votes: 0GitHub stars: 16
- Psm To Spectrum Linking ValidationUse when when you have PSM files from a proteomics search engine (e.g.,Votes: 0GitHub stars: 16
- Pubchem Compound Database RetrievalUse when you need to supply candidate metabolite structures for massVotes: 0GitHub stars: 16
- Pubchem Structure Lookup By NameUse when your metadata table contains compound names but lacks structureVotes: 0GitHub stars: 16
- Pubchem Structure RetrievalUse when you have an experimental tandem mass spectrum and chemical formulaVotes: 0GitHub stars: 16
- Public Database Query IntegrationUse when you have an experimental MS/MS spectrum (m/z and intensity pairsVotes: 0GitHub stars: 16
- Publication Figure CustomizationUse when after annotating a mass spectrometry spectrum with fragmentVotes: 0GitHub stars: 16
- Publication Figure PreparationUse when you have a mass spectrometry spectrum from a supported repositoryVotes: 0GitHub stars: 16
- Publication Image Asset PreparationUse when you have resolved a USI string pointing to a spectrum in a supportedVotes: 0GitHub stars: 16
- Published Metabolic Profile ImplementationUse when you have Nightingale Health 1H-NMR metabolomics measurementsVotes: 0GitHub stars: 16
- Pull Request Change Tracking'Use when investigating how a specific pull request (e.g., PR #72 introducingVotes: 0GitHub stars: 16
- Pure Component Spectrum ExtractionUse when analyzing GC-MS data containing overlapped peaks where two orVotes: 0GitHub stars: 16
- Pymzml Spectrum Object InstantiationUse when when you have mzML spectrum XML already parsed (either fromVotes: 0GitHub stars: 16
- Pyteomics Api UsageUse when when you have polypeptide sequences and need to compute theirVotes: 0GitHub stars: 16
- Python Binary Io And SerializationUse when when you have mzPeak files (Parquet-based archives in uncompressedVotes: 0GitHub stars: 16
- Python Binding Generation With NanobindUse when when you have a C++ library (such as OpenMS) with nanobind bindingVotes: 0GitHub stars: 16
- Python Class Implementation With Dunder MethodsUse when you have mzML spectral data stored in a non-standard formatVotes: 0GitHub stars: 16
- Python Class Interface Design For Ml Libraries'Use when when building a machine learning library for scientific workflowsVotes: 0GitHub stars: 16
- Python Data Structure EngineeringUse when you have raw mass spectrometry quantification tables (featureVotes: 0GitHub stars: 16
- Python Deep Learning Model Loading And ExecutionUse when when you have a pre-trained deep learning model checkpoint (savedVotes: 0GitHub stars: 16
- Python Environment Pinning'Use when when you have access to a research repository or README documentingVotes: 0GitHub stars: 16
- Python Environment SetupUse when when you have cloned a scientific Python repository (e.g., ROIAL-NMR)Votes: 0GitHub stars: 16
- Python Filter Class InheritanceUse when you need to filter compounds during Pickaxe network expansionVotes: 0GitHub stars: 16
- Python Function ImplementationUse when when you have classification predictions and ground-truth labelsVotes: 0GitHub stars: 16
- Python Library IntegrationUse when when you have Thermo Fisher RAW mass spectrometry files andVotes: 0GitHub stars: 16