Claude Skills by HolobiomicsLab

Use when after feature extraction from XCMS or MS-Dial when you have

Use when your input is a feature intensity table (CSV or R data frame)

Use when after loading an MZmine3-exported feature quantification table

Use when after running Paramounter's peak-height optimization on XCMS

Use when you have detected feature tables from multiple LC-IMS-MS/MS

Use when when you have high-resolution mass-spectrometry (HRMS) breath

Use when after completing feature detection, alignment, and optional

Use when after executing an MZmine batch processing workflow on raw metabolomics

Use when when you have a quantitative feature table (peak intensities

Use when you have raw feature tables exported from NPP tools (XCMS, MZmine

Use when transitioning feature intensity data between pipeline stages

Use when you have an aligned feature table from untargeted LC-MS with

Use when after retention-time and m/z-based peak alignment has been completed

Use when after retention-time correction and alignment of centroided

Use when when you have MS1 feature tables from heterogeneous sources—e.g.,

Use when when you need to generate a realistic LC/GC-MS feature table

Use when when processing a metabolomics feature table through multiple

Use when after Asari completes feature detection and produces multiple

Use when you have peak/feature tables from one or more peak picking tools

Use when you have extracted volatile organic compound (VOC) features

Use when when you have a feature intensity matrix (samples × compounds)

Use when after peak quality filtering has been applied to a composite

Use when you have feature tables from external metabolomics software

Use when you have a raw metabolite abundance matrix with substantial

'Use when after loading an MS-DIAL feature table when you need to separate

Use when you have an untargeted metabolomics feature table (m/z, retention

'Use when after imputation and QC sample correction when: (1) your peak

Use when when applying sequential transformations to a metabolomics feature

Use when you have millions of MS/MS spectra in mzML, mzXML, or MGF format

Use when when you have extracted concatenated MS/MS spectra for multiple

Use when when implementing multiple spectrum predictor baseline models

Use when you have preprocessed molecular structures as fixed-length feature

Use when you have experimental retention times measured on a source chromatographic

Use when you have raw FIA-MS full-scan data in mzML format and need to

Use when after simulating and convolving individual metabolite multiplets

Use when when transforming tabular data via the matrix directive and

Use when converting intermediate JSONized experimental metadata (extracted

Use when when working with JSON project documents that must conform to

Use when when you need to construct a POST endpoint that ingests raw

Use when when a spectral processing operation produces multiple output

Use when you have generated or received mzPeak files from a Rust, Python,

Use when you have generated a peak table or feature list from MZmine,

Use when when integrating MSConvert into an automated LC-MS QC workflow

Use when when you have raw mzML or mzXML mass spectrometry data files

Use when when you receive a mass spectrometry imaging dataset in unknown

Use when when building a file I/O abstraction layer that must support

Use when you have a parser library that must support multiple file formats

Use when after executing MassQL queries on mass spectrometry data that

Use when you have molecular descriptor data in CSV or EXCEL format and

Use when you have raw MS data files from one or more instrument vendors