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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Peak Mass Intensity Feature EncodingUse when you have raw mass spectra (e.g., from NIST 2017 or MassBank)Votes: 0GitHub stars: 16
- Peak Matching And Mass AlignmentUse when when you have raw MS2 spectra (m/z and intensity pairs) andVotes: 0GitHub stars: 16
- Peak Matrix ConstructionUse when when you have raw mzML files and a corresponding feature tableVotes: 0GitHub stars: 16
- Peak Network Clustering InadequateUse when you have picked peaks (coordinates and intensities) from INADEQUATEVotes: 0GitHub stars: 16
- Peak Network To Metabolite AssignmentUse when after peak clustering has produced peak network groups (ideallyVotes: 0GitHub stars: 16
- Peak Neutral Loss Occurrence Data ManipulationUse when you have aligned MS2 spectra from multiple samples and needVotes: 0GitHub stars: 16
- Peak Pairwise ComparisonUse when after molecular formula assignment and peak filtering are complete,Votes: 0GitHub stars: 16
- Peak Parameter Optimization For Targeted CompoundsUse when you have centroided high-resolution Orbitrap or GC-CI-MS mzMLVotes: 0GitHub stars: 16
- Peak Picking Algorithm ComparisonUse when you have claims in a paper or tool documentation that one peakVotes: 0GitHub stars: 16
- Peak Picking Algorithm Selection'Use when at the entry point of SLAW processing when you have centroidedVotes: 0GitHub stars: 16
- Peak Picking Avoidance Ms AnalysisUse when analyzing raw 2D MS data (m/z vs. retention time maps) whereVotes: 0GitHub stars: 16
- Peak Picking Parameter ConfigurationUse when when reconstructing a metabolite fragment library entry fromVotes: 0GitHub stars: 16
- Peak Picking Performance BenchmarkingUse when when you have completed non-targeted peak picking and alignmentVotes: 0GitHub stars: 16
- Peak Preservation Vs Noise Reduction TradeoffUse when you have raw or baseline-corrected mass spectra from MSImagingArraysVotes: 0GitHub stars: 16
- Peak Prominence Calculation Local MaximaUse when when processing LC-MS mass tracks (EICs) and you need to identifyVotes: 0GitHub stars: 16
- Peak Property Dictionary ConstructionUse when when you have identified the set of analytes (peptides, nucleosides,Votes: 0GitHub stars: 16
- Peak Property Preparation From CsvUse when you have a CSV file containing nucleoside or peptide molecularVotes: 0GitHub stars: 16
- Peak Property ValidationUse when after converting a CSV file of molecule definitions into a peakVotes: 0GitHub stars: 16
- Peak Quality Assessment By Selectivity And Snr MetricsUse when after elution peaks have been detected on composite mass tracksVotes: 0GitHub stars: 16
- Peak Quality Classifier OptimizationUse when after calculating 12 peak-quality metrics on a development setVotes: 0GitHub stars: 16
- Peak Quality Label StratificationUse when when you have manually labeled LC-MS peaks as 'High quality'Votes: 0GitHub stars: 16
- Peak Quality Metric ComputationUse when you have completed XCMS preprocessing (getEIC() and fillPeaks())Votes: 0GitHub stars: 16
- Peak Quality Metric Interpretation AlignmentUse when when you have loaded aligned peak-alignment data from a molecularVotes: 0GitHub stars: 16
- Peak Quality Threshold FilteringUse when after composite-map peak detection (scipy.signal.find_peaks)Votes: 0GitHub stars: 16
- Peak Recovery From Filtered CandidatesUse when after applying cluster-based filtering with quasi-molecularVotes: 0GitHub stars: 16
- Peak Recovery Post FilteringUse when after applying cluster-based filtering with quasi-molecularVotes: 0GitHub stars: 16
- Peak Selectivity Metric EvaluationUse when when identifying landmark peaks for retention time alignmentVotes: 0GitHub stars: 16
- Peak Shape AssessmentUse when after peak detection in a nontargeted LC-MS workflow when youVotes: 0GitHub stars: 16
- Peak Shape Correlation AnalysisUse when when extracting benchmark peaks from mzML files for multipleVotes: 0GitHub stars: 16
- Peak Similarity AssessmentUse when you have a set of picked peaks from INADEQUATE NMR spectra andVotes: 0GitHub stars: 16
- Peak Table CompilationUse when after peak detection has been applied to untargeted or targetedVotes: 0GitHub stars: 16
- Peak Table DeconvolutionUse when your peak table contains ions with similar retention time andVotes: 0GitHub stars: 16
- Peak Table ExtractionUse when you have raw or converted spectral data (jcamp, RAW, or mzMLVotes: 0GitHub stars: 16
- Peak Table Filtering By Mz And Retention TimeUse when you have a table of detected chromatographic peaks (e.g., fromVotes: 0GitHub stars: 16
- Peak Table Filtering MetabolomicsUse when after generating a peak table from XCMS peakTable() output inVotes: 0GitHub stars: 16
- Peak Table Format DetectionUse when when receiving a peak or feature table output from an unknownVotes: 0GitHub stars: 16
- Peak Table HarmonizationUse when when you have extracted peak tables from multiple independentVotes: 0GitHub stars: 16
- Peak Table Row Count ComparisonUse when you need to validate the reference-semantics behavior of mpactrVotes: 0GitHub stars: 16
- Peak Table Row Count ValidationUse when when using mpactr filter functions (e.g., filter_mispicked_ions,Votes: 0GitHub stars: 16
- Peak Table Schema ValidationUse when after converting peak-picker output (from MZmine, XCMS, MS-DIAL,Votes: 0GitHub stars: 16
- Peak To Formula Assignment MappingUse when when you have a fragment peak list (m/z values and intensities)Votes: 0GitHub stars: 16
- Peak To Metabolite Candidate AssignmentUse when you have a raw peak-intensity matrix from untargeted LC-MS dataVotes: 0GitHub stars: 16
- Peak Validation Synthetic DataUse when after running a 1D peak detection function (e.g., mzapy.peaks.find_peaks_1d_localmaxVotes: 0GitHub stars: 16
- Peaklist Format ParsingUse when you have raw or semi-processed m/z peak detection output fromVotes: 0GitHub stars: 16
- Peaklist Metabolite Assignment PrioritizationUse when you have extracted m/z and retention time (m/z-RT) informationVotes: 0GitHub stars: 16
- Peakmap Heatmap Rendering Mz RtUse when when you have mass spectrometry data organized in a Pandas DataFrameVotes: 0GitHub stars: 16
- Peakmap Visualization GenerationUse when you have mass spectrometry data loaded into a Pandas DataFrameVotes: 0GitHub stars: 16
- Pearson Correlation Coefficient ComputationUse when after annotating mass-difference pairs with candidate adductVotes: 0GitHub stars: 16
- Penalty Factor Application In Spectral SearchUse when when performing reverse spectral search on MS/MS data suspectedVotes: 0GitHub stars: 16
- Peptide B Y Ion Theoretical CalculationUse when when you have a peptide sequence and need to predict which fragmentVotes: 0GitHub stars: 16