Claude Skills by HolobiomicsLab

Use when you have a collection of tokenised BGCs (each gene represented

Use when after obtaining CNN-predicted embeddings for query mass spectra

'Use when when preparing a software release, testing contribution workflows,

Use when after imputation and correction, when metabolomic feature intensities

Use when you have loaded a collection of molecular fingerprint vectors

Use when you have normalized peak-abundance matrices with sample metadata

Use when you need to build a web-based data ingestion layer that accepts

Use when apply DModX when you have a normalized LC-MS feature matrix

Use when when you have a collection of DNA adduct compound structures

Use when you have downloaded fragment records from the experimental or

Use when when you need to deploy the NP Classifier locally with TensorFlow

Use when when a research software project is decomposed into distinct

Use when after building and starting a Dockerized TensorFlow Serving

Use when you need to launch a pre-built Docker image of a scientific

Use when when deploying a Java application in a Docker container and

Use when you have GNPS-style MGF spectral files as input and need to

Use when when you have deployed NP Classifier using Docker Compose and

Use when you have trained or pre-trained ML models (Keras, TensorFlow)

Use when your analysis requires msconvert or another ProteoWizard tool

Use when you have a vendor mass spectrometry raw file (e.g., .raw format)

'Use when when you have vendor raw mass spectrometry files on the host

Use when you have raw mass spectrometry data converted to MS1 format

Use when you need to deploy CloMet for the first time on a new system,

Use when when you have a containerized scientific tool available on Docker

Use when you are building a Docker image for a .NET Framework 4.8 application

Use when when you need to confirm that a published Docker image (e.g.,

Use when after building multiple Docker image variants (e.g., cli, dev,

Use when you need to containerize a C#-based Windows application (like

Use when when deploying a multi-container application stack using docker-compose

Use when deploying the ipbhalle/metfragweb container and you need to

Use when when deploying a Shiny application with mixed R and Python dependencies

Use when when you need to containerize a Windows-only .NET Framework

Use when when uploading or ingesting paired omics project documents into

Use when a mature scientific package (e.g., Mummichog 3) is being migrated

Use when you have inherited a multi-language analysis codebase (R and/or

'Use when you have a Python package with docstrings and want to produce

Use when you have access to a multi-component research software repository

Use when you have a formula-assigned FT-ICR MS dataset (molecular formulas

Use when you have a set of Biosynthetic Gene Clusters in GenBank format

Use when when a user submits one or more MS/MS spectra and has declared

Use when when integrating structure-organism pairs from TCM databases,

Use when when you need to enable non-programmers or domain experts to

'Use when when you have SQL-inspired query strings that encode domain-specific

Use when your research involves searching MS/MS spectra against multiple

Use when you have acquired one or more tandem MS/MS spectra and need

Use when when searching an unknown MS/MS spectrum against a spectral

Use when when performing open modification spectral library searching

Use when your R package wraps a .NET assembly (e.g., RawFileReader) and

Use when when you have just loaded the rawrr R package and need to confirm

Use when you have a C# GUI application targeting .NET Framework 4.8 (Windows-only)