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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Nextflow Profile CustomizationUse when you need to execute a Nextflow metabolomics workflow (e.Votes: 0GitHub stars: 16
- Nextflow Workflow ExecutionUse when you have .mzML or .abf LC-HRMS metabolomics raw data files andVotes: 0GitHub stars: 16
- Nightingale 1h Nmr Data IntegrationUse when you have newly assayed 1H-NMR metabolomics data from NightingaleVotes: 0GitHub stars: 16
- Nmr Chemical Shift Interval MatchingUse when you have isolated one or more regions-of-interest (ROIs) fromVotes: 0GitHub stars: 16
- Nmr Inadequate Spectra Acquisition And PreprocessingUse when when you have raw INADEQUATE NMR spectral data (e.g., from aVotes: 0GitHub stars: 16
- Nmr Metabolite Identity ConfirmationUse when you have preprocessed 1H NMR spectral data with an unknown orVotes: 0GitHub stars: 16
- Nmr Metabolomic Quality Control ReportingUse when you have uploaded a pre-analytical data table containing sampleVotes: 0GitHub stars: 16
- Nmr Modality Ablation AnalysisUse when you have a trained multitask machine learning model for structureVotes: 0GitHub stars: 16
- Nmr Network Visualization And InterpretationUse when you have 2D NMR spectra (heteronuclear: HSQC, HMBC;Votes: 0GitHub stars: 16
- Nmr Peak DeconvolutionUse when when you have raw or processed 1D NMR spectra (FID or frequency-domainVotes: 0GitHub stars: 16
- Nmr Peak Json SerializationUse when you have proton (1H) and carbon-13 (13C) NMR peak measurementsVotes: 0GitHub stars: 16
- Nmr Peak Prediction Via Database LookupUse when you have extracted peak data (chemical shift values in ppm,Votes: 0GitHub stars: 16
- Nmr Peak Quality FilteringUse when you have a CSV or table-formatted input spectral peak list (chemicalVotes: 0GitHub stars: 16
- Nmr Peak Table GenerationUse when you have raw 1D NMR spectra (in NMRPipe or similar format) fromVotes: 0GitHub stars: 16
- Nmr Spectra Deep Learning EncodingUse when when you have preprocessed 1H NMR spectral data from flavorVotes: 0GitHub stars: 16
- Nmr Spectra Preprocessing And Feature ExtractionUse when when you have raw or lightly processed 1D NMR spectra (¹H and/orVotes: 0GitHub stars: 16
- Nmr Spectra PreprocessingUse when when you have raw 1D NMR spectroscopic data (urine, worm, orVotes: 0GitHub stars: 16
- Nmr Spectral Comparative AnalysisUse when you have 2D NMR spectral data (heteronuclear and/or homonuclearVotes: 0GitHub stars: 16
- Nmr Spectral Data Format SerializationUse when you have generated 1D FID time-domain data and Fourier-transformedVotes: 0GitHub stars: 16
- Nmr Spectral Feature ExtractionUse when when you have raw or preprocessed 1H NMR spectral tensors fromVotes: 0GitHub stars: 16
- Nmr Spectral Preprocessing And PhasingUse when when working with raw 1H NMR FID data acquired on instrumentsVotes: 0GitHub stars: 16
- Nmr Spectral ProcessingUse when you have raw NMR/IR/MS spectral data in vendor-specific (RAW),Votes: 0GitHub stars: 16
- Nmr Spectrum Data Import And ParsingUse when you have raw 1D ¹H NMR spectroscopy output consisting of (1)Votes: 0GitHub stars: 16
- Nmr Spectrum NormalizationUse when when preparing library compound spectra and observed mixtureVotes: 0GitHub stars: 16
- Nmr Spectrum Object ConstructionUse when you have Bruker NMR spectral files (raw instrumental output)Votes: 0GitHub stars: 16
- Nmr Spectrum Peak DetectionUse when you have a loaded INADEQUATE NMR spectrum file (after referencingVotes: 0GitHub stars: 16
- Nmr Spectrum Phase AdjustmentUse when you have acquired raw 1D NMR spectra (FID or processed spectraVotes: 0GitHub stars: 16
- Nmr Spectrum PreprocessingUse when you have raw or semi-processed 1D NMR spectra (¹H and/or ¹³C)Votes: 0GitHub stars: 16
- Nmr Spectrum Reconstruction From LibraryUse when you have an NMR spectrum of a mixture sample and a library ofVotes: 0GitHub stars: 16
- Nmr Spectrum Tiling Format Interpretation'Use when when loading or creating an NMR spectral dataset (Dataset.createDataFile)Votes: 0GitHub stars: 16
- Nmr Spectrum To Structure InferenceUse when you have 1D NMR spectra (¹H or ¹³C or both) for an unknown organicVotes: 0GitHub stars: 16
- Nmr Spin System SimulationUse when when you have known metabolite concentrations and their spin-systemVotes: 0GitHub stars: 16
- Nmr Workflow Pipeline ExecutionUse when you have raw 1D NMR spectra (FID or processed spectrum files)Votes: 0GitHub stars: 16
- Nmrbox Environment ManagementUse when when you need to deploy SAND for 1D NMR spectrum deconvolutionVotes: 0GitHub stars: 16
- Noise Artifact Reduction OptimizationUse when you have imported a raw GCxGC-MS chromatogram (NetCDF formatVotes: 0GitHub stars: 16
- Noise Estimation Snr ThresholdingUse when after normalizing, smoothing, and baseline-reducing mass spectraVotes: 0GitHub stars: 16
- Noise Filtering Threshold ApplicationUse when when you have raw or centroid-mode LC-MS All-ion fragmentationVotes: 0GitHub stars: 16
- Noise Level Parameter TuningUse when when you have an aligned GCIMS dataset and need to configureVotes: 0GitHub stars: 16
- Noise Model Implementation And SelectionUse when when constructing synthetic LC-MS/MS runs in SMITER, you mustVotes: 0GitHub stars: 16
- Noise Perturbation Sensitivity AnalysisUse when when comparing pathway analysis methods on metabolomics peakVotes: 0GitHub stars: 16
- Noise Smoothing Chromatographic SignalsUse when when you have raw LC-HRMS profile-mode data (rt × mz intensityVotes: 0GitHub stars: 16
- Noise Suppression Spectral ImagingUse when your input is a raw two-dimensional MS map (m/z vs retentionVotes: 0GitHub stars: 16
- Noise Threshold Filtering Spectral DataUse when working with raw IM-MS data (Agilent MassHunter .d or UIMF format)Votes: 0GitHub stars: 16
- Non Pathway Metabolite ClassificationUse when you have metabolomics intensity data with peak annotations,Votes: 0GitHub stars: 16
- Non Targeted Feature Detection And ScreeningUse when you have raw LC/MS data in mzML format and your analysis goalVotes: 0GitHub stars: 16
- Non Targeted Preprocessing Tool ComparisonUse when you have LC-HRMS mzML data processed by at least one non-targetedVotes: 0GitHub stars: 16
- Nonparametric Reproducibility RankingUse when you have high-dimensional replicate experiment data (e.Votes: 0GitHub stars: 16
- Nontargeted Analysis Workflow ExecutionUse when you have UPLC-HRMS data from ThermoFisher, Agilent, or otherVotes: 0GitHub stars: 16
- Nontargeted Metabolomics Data ProcessingUse when you have raw LC-MS data in vendor or mzML format and need toVotes: 0GitHub stars: 16
- Normalization For Unequal Group SizesUse when when tabulating chemical annotation enrichment (e.g., GNPS spectralVotes: 0GitHub stars: 16