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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Paired Omics Data Structure MappingUse when when you have a paired omics project document (JSON format)Votes: 0GitHub stars: 16
- Pairwise Alignment With Anchor PrioritizationUse when when processing LC-MS metabolomics datasets with 10 or fewerVotes: 0GitHub stars: 16
- Pairwise Mass Comparison ComputationUse when after peak m/z values and molecular formulas have been extractedVotes: 0GitHub stars: 16
- Pairwise Mass Difference ComputationUse when after loading preprocessed MSI intensity data (via msimat fromVotes: 0GitHub stars: 16
- Pairwise Matrix ComputationUse when when you have a cleaned MS/MS dataset with chemical structureVotes: 0GitHub stars: 16
- Pairwise Similarity Scoring Weighted MetricsUse when after anchor selection and RT mapping spline fitting, when youVotes: 0GitHub stars: 16
- Pairwise Spectral ComparisonUse when you have a collection of preprocessed mass spectra (in mzML,Votes: 0GitHub stars: 16
- Pairwise Spectrum ComparisonUse when you have a collection of cleaned mass spectrometry spectra (inVotes: 0GitHub stars: 16
- Pandas Accessor IntegrationUse when you have mass-spectrometry data in a Pandas DataFrame and needVotes: 0GitHub stars: 16
- Pandas Dataframe Column SpecificationUse when when you have mass spectrometry data in a Pandas DataFrame withVotes: 0GitHub stars: 16
- Pandas Dataframe Manipulation Ms ColumnsUse when when you have raw mass spectrometry data (from mzML, BrukerVotes: 0GitHub stars: 16
- Pandas Dataframe Plotting InterfaceUse when you have mass spectrometry data (retention time, m/z, intensity,Votes: 0GitHub stars: 16
- Parallel Computation For Large Library ProcessingUse when your input consists of multiple large MSP files (hundreds ofVotes: 0GitHub stars: 16
- Parallel Computing Workflow OrchestrationUse when when compiling EI or MS/MS spectral libraries from multipleVotes: 0GitHub stars: 16
- Parallel Factor Generation From MetadataUse when when you have a Spectra object backed by an on-disk MS dataVotes: 0GitHub stars: 16
- Parameter Conditional ExecutionUse when when a post-processing step (such as dereplication) risks removingVotes: 0GitHub stars: 16
- Parameter Configuration Conditional LogicUse when setting up a LipidMatch analysis run and you need to selectVotes: 0GitHub stars: 16
- Parameter Driven Preprocessing PipelineUse when you have converted mass spectrometry data in mzXML or mzML formatVotes: 0GitHub stars: 16
- Parameter Range Filtering For Chromatographic DataUse when you have raw MS data in instrument-native or mzML format (AgilentVotes: 0GitHub stars: 16
- Parameter Search Space DesignUse when when beginning an untargeted LC-MS analysis and either (1) theVotes: 0GitHub stars: 16
- Parameter Sharing In Siamese NetworksUse when when processing paired augmented versions of the same inputVotes: 0GitHub stars: 16
- Parameter Tuning MetabolomicsUse when you have at least 3 raw mass spectrometry samples in open formatsVotes: 0GitHub stars: 16
- Parent Fragment Relationship MappingUse when after ISF features have been identified in Part 4 of the ISFragVotes: 0GitHub stars: 16
- Parent Ion Fragment Hierarchy OrganizationUse when after ISF features have been identified and annotated in PartVotes: 0GitHub stars: 16
- Parent Product Relationship TrackingUse when when you have applied biotransformation rules to generate candidateVotes: 0GitHub stars: 16
- Parent Tp Mapping StructureUse when you have generated a TP object (from generateTPs) with structuralVotes: 0GitHub stars: 16
- Parental Signal Selection From ClustersUse when after feature clustering has grouped LC-MS peaks by MS-DIALVotes: 0GitHub stars: 16
- Pareto Front Multi Objective OptimizationUse when you have evaluated a parametric denoising strategy (e.g., frequency-basedVotes: 0GitHub stars: 16
- Pareto Scaling NormalizationUse when you have peak intensity vectors from LC/GC-MS experiments withVotes: 0GitHub stars: 16
- Parser Error Reporting DiagnosticsUse when when implementing or extending a DSL parser (lexer + recursiveVotes: 0GitHub stars: 16
- Pathway Activity Decomposition Via PlageUse when you have a log2-transformed, standardized peak intensity matrixVotes: 0GitHub stars: 16
- Pathway Activity Decomposition Via SvdUse when when you have a metabolite intensity matrix (samples × metabolites)Votes: 0GitHub stars: 16
- Pathway Activity Propagation InferenceUse when when you have an untargeted metabolomics feature table (m/zVotes: 0GitHub stars: 16
- Pathway Annotation Database MatchingUse when after marker identification or metabolite annotation has producedVotes: 0GitHub stars: 16
- Pathway Annotation MappingUse when you have a metabolomics dataset with metabolite identifiersVotes: 0GitHub stars: 16
- Pathway Database Filtering By DetectionUse when you have run a metabolomics experiment with incomplete coverageVotes: 0GitHub stars: 16
- Pathway Database Querying'Use when when preparing to run ORA on a metabolomics study: you haveVotes: 0GitHub stars: 16
- Pathway Over Representation Analysis OraUse when apply ORA after conducting statistical tests (e.Votes: 0GitHub stars: 16
- Pathway Rank Stability AssessmentUse when when you have completed a PALS pathway analysis on a clean metabolomicsVotes: 0GitHub stars: 16
- Pathway Ranking And Prioritization'Use when after peak annotation when you have: (1) a peak intensity matrixVotes: 0GitHub stars: 16
- Pathway Robustness BenchmarkingUse when when selecting a pathway analysis method for metabolomics peakVotes: 0GitHub stars: 16
- Pathway Score AggregationUse when you have a metabolite intensity matrix (samples × metabolites)Votes: 0GitHub stars: 16
- Pca Dimensionality Reduction UnsupervisedUse when you have a feature-by-sample matrix (rows = annotated chemicalVotes: 0GitHub stars: 16
- Peak And Neutral Loss CountingUse when when you have matchms-processed MS2 spectra from multiple samplesVotes: 0GitHub stars: 16
- Peak Annotation Quantification And ComparisonUse when you have a tandem mass spectrum (MsmsSpectrum) from a knownVotes: 0GitHub stars: 16
- Peak Annotation Refinement Structure DrivenUse when you have two related compounds (a known reference and its structuralVotes: 0GitHub stars: 16
- Peak Annotation With Bounding BoxesUse when you have isolated reference peaks from training chromatogramsVotes: 0GitHub stars: 16
- Peak Apex Identification From Intensity ProfilesUse when after EIC candidate generation and peak detection have beenVotes: 0GitHub stars: 16
- Peak Area And Intensity MeasurementUse when when you have vendor-format GC-CI-MS or LC-MS data from stableVotes: 0GitHub stars: 16
- Peak Background Binary ClassificationUse when you have LC-HRMS profile-mode chromatograms with extracted localVotes: 0GitHub stars: 16