Claude Skills by HolobiomicsLab

Use when you need to compile and test a .NET-based metabolomics or bioinformatics

Use when you need to containerize a C# application (e.g., AirdPro) that

Use when you are attempting to compile a WPF-based .NET desktop application

Use when when constructing a comprehensive lipid spectral reference library

Use when your preprocessed metabolomics matrix (log2-scaled, with rows

Use when you have GCIMS samples exhibiting misalignment across drift

Use when you have loaded a raw GCIMS dataset and need to isolate the

Use when after peak detection in GCIMS when you need to group detected

Use when you have tunemix or other reference standards with known m/z,

Use when you have search results from DIA mass spectrometry data containing

Use when when training a deep neural network on mass spectrometry spectral

Use when when you have obtained a DrugBank release file (requiring access

Use when when you have obtained a DrugBank release file (requiring access

Use when when you have molecular input data available in two or more

Use when you have peak-picked LC-MS data with multiple features that

Use when when merging metabolomic data from multiple studies, you have

Use when you have a large collection of MS/MS spectra with harmonized

Use when when processing large collections of mass spectra from multiple

Use when after constructing a hierarchical dendrogram from a biweight

Use when you have prototyped a novel data-dependent acquisition strategy

Use when you need to enumerate all supported metadata conversions in

Use when when building an automated converter discovery and job enumeration

Use when you have per-sample metabolite abundance data (e.g., from LC-MS

Use when when you have small-molecule structures (SMILES or structure

Use when when implementing or validating a quantitative formula (e.g.,

Use when after applying statistical tests (e.g., Student's t-test) to

Use when after performing statistical tests (t-test, Mann–Whitney U,

Use when when you have CE-MS data with migration times that vary between

Use when you have raw CE-MS data (mzML or netCDF format) with migration

Use when you have raw or archived MSP spectral library files and need

Use when when you have a molecular structure (XYZ or equivalent format)

Use when you need to build a comprehensive EI spectral reference library

Use when you have raw electron ionization mass spectra (m/z and intensity

Use when after running XCMS getEIC() to generate xcmsEIC objects and

Use when after completing MS2 annotation in the JPA metabolomics workflow,

Use when after EIC candidate generation from LC/HRMS data (mzXML, mzML,

Use when after abundance-correlation-based feature group refinement when

Use when after computing module significance (MS) statistics for metabolic

Use when you have a query electron ionization (EI) mass spectrum in msp

Use when you have raw MS/MS peak lists and suspect electronic noise contamination—particularly

Use when when you need to create synthetic noisy MS/MS spectra for benchmarking

Use when working with raw MS/MS spectra that contain ions with repeated

Use when you are preparing to perform effective mobility transformation

Use when you have formula-assigned FT-ICR MS data (CSV or tab-delimited

Use when when you have FT-ICR MS peak data with assigned molecular formulas

'Use when after loading a numeric elemental ratio column (H/C, O/C, N/C,

Use when when you have raw co-fractionation/mass-spectrometry elution

Use when when a QC check fails during an active LC-MS run and configured

Use when when you have pre-computed embeddings (from MSBERT, Spec2Vec,

Use when after a CNN model has generated predicted molecular embeddings