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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Peak Border Center EstimationUse when you have LC-HRMS chromatograms in retention time × m/z matrixVotes: 0GitHub stars: 16
- Peak Boundary Definition And ValidationUse when after nontargeted peak detection has identified candidate peaksVotes: 0GitHub stars: 16
- Peak Boundary Identification In Extracted Ion DataUse when after extracting ion chromatograms and ion mobilograms fromVotes: 0GitHub stars: 16
- Peak Boundary LocalizationUse when after you have (1) extracted regions of interest (ROIs) aroundVotes: 0GitHub stars: 16
- Peak Classification ValidationUse when after training or loading a NeatMS neural network model, beforeVotes: 0GitHub stars: 16
- Peak Collision FlaggingUse when you have extracted a peak list from MSI data and need to annotateVotes: 0GitHub stars: 16
- Peak Data Extraction And FormattingUse when when you have initialized an MsBackend subclass (e.Votes: 0GitHub stars: 16
- Peak Data Integrity ChecksUse when implementing or modifying a writable MsBackend subclass (e.g.,Votes: 0GitHub stars: 16
- Peak Deconvolution PreprocessingUse when you have raw IM-MS data in Agilent MassHunter (.d) or UIMF formatVotes: 0GitHub stars: 16
- Peak Detection Accuracy AssessmentUse when after running a non-targeted preprocessing (NPP) pipeline (e.g.,Votes: 0GitHub stars: 16
- Peak Detection And Alignment In MetabolomicsUse when after generating simulated mzML output from ViMMS and you needVotes: 0GitHub stars: 16
- Peak Detection And Boundary IdentificationUse when when you have CE-MS raw data (mzML or netCDF format) with extractedVotes: 0GitHub stars: 16
- Peak Detection And Mass AlignmentUse when when you have raw LC-MS/MS data files (.mzML, .raw, or vendorVotes: 0GitHub stars: 16
- Peak Detection Cwt OptimizationUse when when you have a pre-aligned GCIMSDataset and need to systematicallyVotes: 0GitHub stars: 16
- Peak Detection In Lcms DataUse when after retention-time correction has been completed on centroidedVotes: 0GitHub stars: 16
- Peak Detection Mass SpectrometryUse when you have raw mass-spectrometry data files (mzML, mzXML, or vendorVotes: 0GitHub stars: 16
- Peak Detection Optimization FreeUse when when processing raw untargeted LC/MS data in mzML or mzXML formatVotes: 0GitHub stars: 16
- Peak Detection Parameter OptimizationUse when when loading and processing raw or recalibrated FT-ICR massVotes: 0GitHub stars: 16
- Peak Detection Signal ProcessingUse when after feature extraction from mzML/mzXML breath analysis dataVotes: 0GitHub stars: 16
- Peak Detection Targeted MetabolomicsUse when you have mass spectrometry data in .raw, .d, or mzXML formatVotes: 0GitHub stars: 16
- Peak Detection Threshold ApplicationUse when converting raw MS/MS spectra from library files (e.g., .mspVotes: 0GitHub stars: 16
- Peak Evaluation Metrics Cselectivity Snr Gaussian FitUse when after scipy.signal.find_peaks has identified candidate peaksVotes: 0GitHub stars: 16
- Peak Extraction Rescue AlgorithmsUse when traditional peak extraction algorithms have produced a featureVotes: 0GitHub stars: 16
- Peak Feature Retention Time AlignmentUse when you have preprocessed (smoothed and baseline-corrected) 2D-GCxGC-MSVotes: 0GitHub stars: 16
- Peak Filtering And Preprocessing Lc MsUse when you have raw LC-MS/MS spectra from vendor instruments (mzML,Votes: 0GitHub stars: 16
- Peak Filtering And Quality ControlUse when after peak picking and alignment have been performed on MSImagingArraysVotes: 0GitHub stars: 16
- Peak Filtering Noise RemovalUse when you have raw MS/MS spectra (in formats like mzML, json, mgf,Votes: 0GitHub stars: 16
- Peak Formula EnumerationUse when when you have tandem mass spectra (mz/intensity pairs with precursorVotes: 0GitHub stars: 16
- Peak Height Threshold OptimizationUse when you have raw metabolomic LC-MS data processed through XCMS CentWaveVotes: 0GitHub stars: 16
- Peak Height Threshold SelectionUse when when applying iterative peak detection (local-maximum or Gaussian-fitVotes: 0GitHub stars: 16
- Peak Integration Parameter OptimizationUse when after peak detection and clustering have been completed on alignedVotes: 0GitHub stars: 16
- Peak Integration Quality AssessmentUse when you have a metabolomic feature table (rows=features, columns=samples)Votes: 0GitHub stars: 16
- Peak Intensity Chromatographic Property AnalysisUse when you have a filtered MS-DIAL peak list (post-generic filtering)Votes: 0GitHub stars: 16
- Peak Intensity Distribution AnalysisUse when after executing feature detection and quantification on rawVotes: 0GitHub stars: 16
- Peak Intensity Normalization Method SelectionUse when after peak filtering (by m/z, isotopic presence, formula assignmentVotes: 0GitHub stars: 16
- Peak Intensity Normalization Weighted AggregationUse when when training Word2Vec embeddings on mass spectra representedVotes: 0GitHub stars: 16
- Peak Intensity NormalizationUse when you have raw MS/MS spectral peak lists with absolute intensityVotes: 0GitHub stars: 16
- Peak Intensity Removal And ThresholdingUse when when you have imported raw mass spectrometry spectral data (inVotes: 0GitHub stars: 16
- Peak Intensity Threshold OptimizationUse when you have loaded raw mass spectrometry spectral data (in MGF,Votes: 0GitHub stars: 16
- Peak Intensity Vector TransformationUse when you have a peak intensity matrix from LC/GC-MS analysis withVotes: 0GitHub stars: 16
- Peak Labeling And AnnotationUse when immediately after automatic peak detection on a raw or processedVotes: 0GitHub stars: 16
- Peak List Column MappingUse when when uploading a new peak list or complex sample data file withVotes: 0GitHub stars: 16
- Peak List Filtering And CleaningUse when you have acquired MS/MS spectra containing suspect noise ions—eitherVotes: 0GitHub stars: 16
- Peak List Filtering For Quality ControlUse when you have extracted a raw peak list (chemical shifts in a TXTVotes: 0GitHub stars: 16
- Peak List FormattingUse when after successfully resolving a USI string to a specific massVotes: 0GitHub stars: 16
- Peak List Parsing And ValidationUse when when importing raw mass spectrometry data from vendor or openVotes: 0GitHub stars: 16
- Peak List Simulation With Controlled EffectsUse when you need to validate batch correction or normalization algorithms,Votes: 0GitHub stars: 16
- Peak M Z IndexingUse when when you have LC-MS-MS metabolomics data in MGF format and needVotes: 0GitHub stars: 16
- Peak M Z RecalibrationUse when after peak detection when you have a table of detected peaksVotes: 0GitHub stars: 16
- Peak Map Rendering Retention Time Mz IntensityUse when when you have loaded mass spectrometry data (from mzML or BrukerVotes: 0GitHub stars: 16