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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Peptide Charge State PredictionUse when you have raw mass spectrometry data in MS1 format and need toVotes: 0GitHub stars: 16
- Peptide Isotopic Envelope CalculationUse when you have a peptide sequence, precursor charge state, and observedVotes: 0GitHub stars: 16
- Peptide Level Spectrum GroupingUse when after embedding MS/MS spectra into a 32-dimensional vector spaceVotes: 0GitHub stars: 16
- Peptide Mass Calculation AverageUse when you have a list of polypeptide sequences (one per line or CSVVotes: 0GitHub stars: 16
- Peptide Modification Representation And Handling'Use when when you have an observed MS/MS spectrum and need to annotateVotes: 0GitHub stars: 16
- Peptide Sequence Composition ParsingUse when you have peptide or protein sequences (as FASTA strings or textVotes: 0GitHub stars: 16
- Peptide Sequence Prediction ComparisonUse when when you have a pre-trained Casanovo model, annotated MS/MSVotes: 0GitHub stars: 16
- Peptide Sequence To Spectrum ConversionUse when when you have a peptide sequence and need to predict its fragmentationVotes: 0GitHub stars: 16
- Peptide Spectrum Match AnnotationUse when when you have a peptide sequence, observed MS2 spectrum peaksVotes: 0GitHub stars: 16
- Peptide Spectrum Matching Evaluation'Use when when you have a tandem mass spectrum (MSMS) with known peptideVotes: 0GitHub stars: 16
- Peptide Spectrum MatchingUse when when you have high-resolution tandem mass spectrometry dataVotes: 0GitHub stars: 16
- Peptide Spectrum Representation LearningUse when you have a collection of MS/MS spectra (in mzML or MGF format)Votes: 0GitHub stars: 16
- Peptidoform Representation And InterpretationUse when when you have a tandem mass spectrometry spectrum with a knownVotes: 0GitHub stars: 16
- Peptidoform Scoring And FilteringUse when after a transformer-based de novo sequencing model (such asVotes: 0GitHub stars: 16
- Per Browser Developer Setting NavigationUse when you are attempting to run a web application (such as COLMARvista)Votes: 0GitHub stars: 16
- Per Lipid Class NormalizationUse when you have IM-MS lipidomic data from samples spiked with U13C-labeledVotes: 0GitHub stars: 16
- Per Root Metabolite ProfilingUse when when you have deposited mass spectrometry imaging datasets forVotes: 0GitHub stars: 16
- Per Sample Feature Composition AnalysisUse when when you have aligned and quantified mass spectrometry featuresVotes: 0GitHub stars: 16
- Per Sample Pass Fail ClassificationUse when after LC-MS data acquisition is complete (or during real-timeVotes: 0GitHub stars: 16
- Per Sample Spectral AggregationUse when you have raw MS2 spectra from a sample and need to collapseVotes: 0GitHub stars: 16
- Percentile Feature Filtering For NormalizationUse when you have a raw or pre-processed LC-MS feature table with multipleVotes: 0GitHub stars: 16
- Percentile Threshold FilteringUse when you have computed multiple independent scoring functions (e.g.,Votes: 0GitHub stars: 16
- Performance Benchmarking Computational SystemsUse when you have implemented or reconstructed a performance-criticalVotes: 0GitHub stars: 16
- Performance Degradation Quantification And AnalysisUse when you have a pretrained model with documented performance on aVotes: 0GitHub stars: 16
- Performance Metric Comparison Across BackendsUse when when you have access to a set of gallery or benchmark scriptsVotes: 0GitHub stars: 16
- Performance Metric Extraction From PublicationsUse when you have identified a claim that one tool outperforms anotherVotes: 0GitHub stars: 16
- Performance Threshold Filtering And AnalysisUse when when a trained model produces probabilistic or ensemble predictionsVotes: 0GitHub stars: 16
- Permanova Effect Size InterpretationUse when after running PERMANOVA on distance matrices derived from FT-ICRVotes: 0GitHub stars: 16
- Permanova Statistical Testing Multivariate GroupsUse when you have normalized peak intensities or abundance matrices fromVotes: 0GitHub stars: 16
- Permutation Test P Value EstimationUse when after computing Multi-Block Variable Importance in ProjectionVotes: 0GitHub stars: 16
- Pfas Candidate Prioritization By ScoringUse when you have a feature list (containing m/z, retention time, andVotes: 0GitHub stars: 16
- Pfas Characteristic Fragment IdentificationUse when you have centroided data-dependent acquisition (ddMS2) mzMLVotes: 0GitHub stars: 16
- Pfas Characteristic Mass Difference DetectionUse when you have centroided MS2 spectra (ddMS2 data in mzML format)Votes: 0GitHub stars: 16
- Pfas Feature AnnotationUse when when you have a feature list (m/z, retention time, intensity)Votes: 0GitHub stars: 16
- Pfas Feature PrioritizationUse when you have detected features in LC- or GC-HRMS data (via pyOpenMSVotes: 0GitHub stars: 16
- Pfas Homologous Series DetectionUse when you have an m/z-resolved feature list from LC- or GC-HRMS analysisVotes: 0GitHub stars: 16
- Phase I Phase Ii Transformation RulesUse when when you have a parent drug's raw chemical formula and needVotes: 0GitHub stars: 16
- Phylogenetic Tree ValidationUse when after generating a Chemical Feature Tree from q2-qemistree (orVotes: 0GitHub stars: 16
- Physicochemical Property ComputationUse when you have one or more peptide or protein sequences in stringVotes: 0GitHub stars: 16
- Pipeline End To End Execution And ValidationUse when you have a published computational pipeline with deposited codeVotes: 0GitHub stars: 16
- Pipeline Prerequisite CheckingUse when before launching the DaDIA metabolomics pipeline or any multi-packageVotes: 0GitHub stars: 16
- Pixel Binning And Spatial RegistrationUse when you have raw line-scan mass spectrometry imaging data from nano-DESIVotes: 0GitHub stars: 16
- Pixel Intensity Scaling And ThresholdingUse when after normalizing an MSI pixel array to TIC or an internal standard,Votes: 0GitHub stars: 16
- Plant Species Authentication Via Mass SpectrometryUse when when you have mass spectrometry raw data (DI-MS or ASAP-MS format)Votes: 0GitHub stars: 16
- Plasma Serum Sample ComparisonUse when you have NMR-based metabolomics measurements from a cohort containingVotes: 0GitHub stars: 16
- Plate Layout Parameter ConfigurationUse when after uploading a sample list to InjectionDesign and beforeVotes: 0GitHub stars: 16
- Plot Customization And StylingUse when after generating a numerical visualization (e.g., confusionVotes: 0GitHub stars: 16
- Plotly 3d Surface Scatter VisualizationUse when you have mass spectrometry data (m/z, retention time, intensity)Votes: 0GitHub stars: 16
- Pls Pls Da Classification ModelingUse when you have a preprocessed peak table (feature matrix with samplesVotes: 0GitHub stars: 16
- Podp Metadata Retrieval And IntegrationUse when when running NPLinker in PODP mode (as opposed to local mode),Votes: 0GitHub stars: 16