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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Mzml File Format ParsingUse when when you have mass spectrometry raw data in mzML format andVotes: 0GitHub stars: 16
- Mzml File Format UnderstandingUse when you have mass spectrometry raw data in mzML format (includingVotes: 0GitHub stars: 16
- Mzml File Format WritingUse when you have peak properties (mass, intensity, retention time) forVotes: 0GitHub stars: 16
- Mzml File Generation Mass SpectrometryUse when after frequency-based denoising and sample-level aggregationVotes: 0GitHub stars: 16
- Mzml File Import XcmsUse when you have raw mzML files from a mass spectrometry instrumentVotes: 0GitHub stars: 16
- Mzml File Parsing And IngestionUse when you have raw profile LC-MS data in .mzML format and need toVotes: 0GitHub stars: 16
- Mzml File Parsing And Roi ExtractionUse when when you have a real mzML file from an untargeted metabolomicsVotes: 0GitHub stars: 16
- Mzml File ParsingUse when you have raw LC- or GC-HRMS data from vendor instruments (ESIVotes: 0GitHub stars: 16
- Mzml File Random Access By Spectrum IdUse when you have a compressed mzML file (mzML.gz or indexed gzip format)Votes: 0GitHub stars: 16
- Mzml Format Export From SimulatorUse when after running an Environment simulation in ViMMS that has generatedVotes: 0GitHub stars: 16
- Mzml Format GenerationUse when after completing a virtual LC-MS/MS acquisition simulation usingVotes: 0GitHub stars: 16
- Mzml Format Output Generation And ValidationUse when after running a ViMMS simulation loop with a fragmentation controllerVotes: 0GitHub stars: 16
- Mzml Format Output ValidationUse when after executing smiter.synthetic_mzml.write_mzml to generateVotes: 0GitHub stars: 16
- Mzml Format ValidationUse when after downloading an mzML file from a remote repository (e.g.,Votes: 0GitHub stars: 16
- Mzml Metabolomics Data Import'Use when you have raw LC-HRMS metabolomics data in mzML or ABF formatVotes: 0GitHub stars: 16
- Mzml Mzxml File Format ProcessingUse when your raw LC-MS data are in vendor-specific binary formats (e.g.,Votes: 0GitHub stars: 16
- Mzml Mzxml ParsingUse when you have raw LC-MS/MS data in mzML or mzXML format and needVotes: 0GitHub stars: 16
- Mzml Mzxml Spectrum ReadingUse when when you have raw mzML or mzXML files containing uncompressedVotes: 0GitHub stars: 16
- Mzml Output ValidationUse when after running AirdPro's CLI conversion pipeline (run-cli.shVotes: 0GitHub stars: 16
- Mzml Spectral Format ParsingUse when you have mzML-format raw data files (from any mass spectrometryVotes: 0GitHub stars: 16
- Mzml Spectral ParsingUse when when beginning a metabolomics annotation workflow with raw MS2Votes: 0GitHub stars: 16
- Mzml Spectrum Chromatogram Object ConstructionUse when you have an indexed gzip–compressed mzML file (mzML.gz withVotes: 0GitHub stars: 16
- Mzml To Imzml Format ConversionUse when you have mzML files generated from raw vendor mass spectrometryVotes: 0GitHub stars: 16
- Mzml To Mzpeak Binary SerializationUse when you have one or more mzML files (XML-based mass spectrometryVotes: 0GitHub stars: 16
- Mzml Xml DeserializationUse when your input is an mzML file (XML-based mass spectrometry dataVotes: 0GitHub stars: 16
- Mzpeak File Format ParsingUse when when you have mass spectrometry data stored in mzPeak formatVotes: 0GitHub stars: 16
- Mzpeak File Io Operations'Use when you have raw mass spectrometry data (vendor formats, mzML,Votes: 0GitHub stars: 16
- Mzpeak Format File ParsingUse when you have an mzPeak file (uncompressed ZIP archive containingVotes: 0GitHub stars: 16
- Mzpeak Format Io OperationsUse when you have mass spectrometry run data (spectra, chromatograms,Votes: 0GitHub stars: 16
- Mztab Format Export And AnnotationUse when after Casanovo has generated ranked peptide sequence predictionsVotes: 0GitHub stars: 16
- Mztab Format GenerationUse when after completing peak detection, MS1 feature picking, and accurateVotes: 0GitHub stars: 16
- Natural Isotope Abundance CalculationUse when when processing mass spectrometry imaging (MSI) data in positiveVotes: 0GitHub stars: 16
- Natural Isotope Abundance PropagationUse when you have LC-MS fractional abundances of measured isotopologuesVotes: 0GitHub stars: 16
- Natural Product Classifier SubstitutionUse when gNPS has ceased supplying ClassyFire ontology information forVotes: 0GitHub stars: 16
- Natural Product Database Querying Norine Coconut NpatsasUse when you have a chemical structure (as SMILES string or identifier)Votes: 0GitHub stars: 16
- Natural Products Workflow OrchestrationUse when you have LC-MS/MS DDA metabolomics data (positive and/or negativeVotes: 0GitHub stars: 16
- Naturally Occurring Isotope Contribution AccountingUse when you have raw fractional abundances of measured isotopologuesVotes: 0GitHub stars: 16
- Nearest Neighbor Candidate RetrievalUse when when you have a large spectral library (thousands to millionsVotes: 0GitHub stars: 16
- Nearest Neighbor Clustering By Mass DifferenceUse when processing LC-MS metabolomics studies with >10 samples whereVotes: 0GitHub stars: 16
- Nearest Neighbor Clustering For Mass SpectrometryUse when you have extracted mass tracks (EICs) from individual samplesVotes: 0GitHub stars: 16
- Nearest Neighbor Index ConstructionUse when when you have millions of high-resolution MS/MS spectra convertedVotes: 0GitHub stars: 16
- Nearest Neighbor Index QueryingUse when you have millions of MS/MS spectra to cluster and have alreadyVotes: 0GitHub stars: 16
- Negative Adduct Tokenization In Mass SpectrometryUse when you have negative-mode MS/MS spectra with annotated molecularVotes: 0GitHub stars: 16
- Neighbor Wise Constraint Propagation In DtwUse when when XCMS or other DTW-based aligners have produced misalignedVotes: 0GitHub stars: 16
- Neighbourhood Density ComputationUse when after library-matching has produced ranked candidate spectraVotes: 0GitHub stars: 16
- Nested Data Structure Construction For Chemical MetadataUse when you have loaded raw Agilent Unknowns Analysis CSV output withVotes: 0GitHub stars: 16
- Network Based Functional PredictionUse when you have an untargeted metabolomics feature table with m/z values,Votes: 0GitHub stars: 16
- Network Based Metabolite IdentificationUse when when you have m/z values from spatially-resolved mass spectrometryVotes: 0GitHub stars: 16
- Network Component Identification And FilteringUse when you have a GNPS GraphML molecular network and need to isolateVotes: 0GitHub stars: 16
- Network Diffusion PrioritizationUse when after clustering and filtering KEGG candidates for LC-MS features,Votes: 0GitHub stars: 16