All authors
Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Ms2 Fingerprint Blank Contamination RemovalUse when after aligning MS2 fingerprints across samples (generating aVotes: 0GitHub stars: 16
- Ms2 Fingerprint Distance CalculationUse when after MS2 fingerprints have been generated by counting MS2 peaksVotes: 0GitHub stars: 16
- Ms2 Fingerprint Matrix MergingUse when you have two MemoMatrix objects generated from separate sampleVotes: 0GitHub stars: 16
- Ms2 Fingerprint Vector GenerationUse when you have LC-MS/MS data in mzML, mzXML, or MGF format from oneVotes: 0GitHub stars: 16
- Ms2 Fragment M Z Grouping And AggregationUse when you have extracted MS/MS spectra for a given metabolomic featureVotes: 0GitHub stars: 16
- Ms2 Fragment Pattern RecognitionUse when you have data-dependent acquisition (DDA) MS2 spectra from HRMSVotes: 0GitHub stars: 16
- Ms2 Fragmentation Spectrum ParsingUse when you have raw MS2 spectra in common formats (mzML, mzXML, msp,Votes: 0GitHub stars: 16
- Ms2 Peak Detection And CountingUse when you have raw MS2 spectral data (MGF, mzML, or msp format) andVotes: 0GitHub stars: 16
- Ms2 Precursor ExtractionUse when when you have a resolved spectrum file in mzML or mzXML formatVotes: 0GitHub stars: 16
- Ms2 Spectra Parsing And LoadingUse when when beginning a MEMO analysis workflow with raw or unalignedVotes: 0GitHub stars: 16
- Ms2 Spectra Tic FilteringUse when after concatenating replicate MS/MS spectra for each precursorVotes: 0GitHub stars: 16
- Ms2 Spectral Deconvolution And AnnotationUse when you have acquired LC-IMS-MS/MS data (or equivalent multidimensionalVotes: 0GitHub stars: 16
- Ms2 Spectral Dissimilarity ScoringUse when you have MS2 fragmentation spectra from multiple metabolomicsVotes: 0GitHub stars: 16
- Ms2 Spectral Feature ExtractionUse when you have LC-MS/MS metabolomics data in MGF format and need toVotes: 0GitHub stars: 16
- Ms2 Spectral InterpretationUse when you have extracted an MS1 feature table (from XCMS or customVotes: 0GitHub stars: 16
- Ms2 Spectral Library Matching Post Denoising'Use when after frequency-based denoising of MS/MS spectra, when youVotes: 0GitHub stars: 16
- Ms2 Spectral Similarity ComputationUse when you have two or more LC-MS/MS datasets (in mzML, mzXML, or MGFVotes: 0GitHub stars: 16
- Ms2 Spectral Similarity ScoringUse when after temporal intensity profile correlation and exact massVotes: 0GitHub stars: 16
- Ms2 Spectrum Collection From Data Dependent AcquisitionUse when you have DDA LC-MS/MS raw data (mzML format) with detected chromatographicVotes: 0GitHub stars: 16
- Ms2 Spectrum ConsolidationUse when after sample alignment and feature grouping steps in untargetedVotes: 0GitHub stars: 16
- Ms2 Spectrum Extraction And Consensus BuildingUse when when you have DDA LC-MS/MS data (mzML format) with identifiedVotes: 0GitHub stars: 16
- Ms2 Spectrum Feature ExtractionUse when you have DDA (data-dependent acquisition) LC-MS/MS data withVotes: 0GitHub stars: 16
- Ms2 Spectrum Format PreparationUse when you have raw or unstructured MS2 spectral data (from untargetedVotes: 0GitHub stars: 16
- Ms2 Spectrum Peak Filtering By Training Set MembershipUse when when you have raw MS2 spectra (m/z and intensity pairs) andVotes: 0GitHub stars: 16
- Ms2lda Feature AnnotationUse when after creating a GNPS mass spectral molecular network and runningVotes: 0GitHub stars: 16
- Ms2lda Motif To Network MappingUse when when you have a GNPS molecular network (classical or feature-based)Votes: 0GitHub stars: 16
- Ms2lda Substructure AssignmentUse when you have a GNPS molecular network (in GML or GraphML format)Votes: 0GitHub stars: 16
- Msbackend Api ImplementationUse when you need to create a new backend to integrate MS data from aVotes: 0GitHub stars: 16
- Msconvert Integration And InvocationUse when when you have vendor-format LC-MS acquisition files (ThermoVotes: 0GitHub stars: 16
- Msconvert Parameter ConfigurationUse when you have acquired raw mass spectrometry data from ThermoFisher,Votes: 0GitHub stars: 16
- Msconvert Tool ConfigurationUse when you have vendor-specific raw mass spectrometry data files (e.g.,Votes: 0GitHub stars: 16
- Msconvert Workflow ConfigurationUse when when you need to convert vendor-specific raw mass spectrometryVotes: 0GitHub stars: 16
- Mse Reconstruction LossUse when training embeddings from multi-modal spectral data (peak informationVotes: 0GitHub stars: 16
- Msexperiment Backend ConfigurationUse when you have multiple centroided .mzML LC-MS files that need toVotes: 0GitHub stars: 16
- Msflo Metabolite AnnotationUse when after MS-DIAL has completed feature detection and peak alignmentVotes: 0GitHub stars: 16
- Msi Array Data Structure HandlingUse when you have imported raw imzML or Analyze 7.5 imaging data andVotes: 0GitHub stars: 16
- Msi Data Format InteroperabilityUse when your MSI data is stored in a Cardinal imaging experiment objectVotes: 0GitHub stars: 16
- Msi Data Import CsvUse when you have MSI intensity data exported from MSiReader or SCiLSVotes: 0GitHub stars: 16
- Msi Data Matrix Import And ValidationUse when you have MSI intensity data exported from MSiReader, SCiLS,Votes: 0GitHub stars: 16
- Msi Data Processing Speed MeasurementUse when when you need to validate that MSI software (e.g., LipidQMap)Votes: 0GitHub stars: 16
- Msi Data Table ExportUse when after calculating mean intensity values across all spectra inVotes: 0GitHub stars: 16
- Msi Data Visualization And Spatial AnalysisUse when when you have imzML-format MSI data and need to identify biochemicalVotes: 0GitHub stars: 16
- Msi Feature Metadata PreservationUse when you are converting a processed Cardinal MSImagingExperimentVotes: 0GitHub stars: 16
- Msi Imaging Experiment Class ManipulationUse when when loading mass spectrometry imaging data from imzML or AnalyzeVotes: 0GitHub stars: 16
- Msi Intensity Matrix Isotope CorrectionUse when you have loaded a feature-by-pixel intensity matrix (HDF5 formatVotes: 0GitHub stars: 16
- Msi Intensity Matrix NormalizationUse when after isotope correction when you have extracted intensity matricesVotes: 0GitHub stars: 16
- Msi Metadata Curation And StorageUse when after generating a 3D pixel array (shape n+1, y, x) from rawVotes: 0GitHub stars: 16
- Msi Metadata Harmonization Across Image StacksUse when you have processed and quantified MSI data from one or moreVotes: 0GitHub stars: 16
- Msi Peak AnnotationUse when you have processed MSI data (peak matrix and spatial coordinates)Votes: 0GitHub stars: 16
- Msi Peak Intensity ExtractionUse when you have MSI intensity data exported from commercial softwareVotes: 0GitHub stars: 16