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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Ms Modification Site EvaluationUse when after ModiFinder has generated modification site probabilityVotes: 0GitHub stars: 16
- Ms Ms Feature Preparation For GnpsUse when you have completed LC-MS/MS data processing and feature alignmentVotes: 0GitHub stars: 16
- Ms Ms Fragment Assignment And AnnotationUse when when you have predicted MS/MS fragments from quantum chemistryVotes: 0GitHub stars: 16
- Ms Ms Ion InterpretationUse when when you have two MS/MS spectra (each with a precursor m/z andVotes: 0GitHub stars: 16
- Ms Ms Raw Data LoadingUse when when you have raw LC-MS/MS instrument output files (e.g., .mzML,Votes: 0GitHub stars: 16
- Ms Ms Similarity Metric ComparisonUse when when you have MS/MS spectra from both query compounds and aVotes: 0GitHub stars: 16
- Ms Ms Spectral Data PreprocessingUse when when you have MS/MS spectral data (raw or intermediate format)Votes: 0GitHub stars: 16
- Ms Ms Spectral InterpretationUse when you have acquired MS/MS spectral data (in mzML, mzXML, or equivalentVotes: 0GitHub stars: 16
- Ms Ms Spectral Library MatchingUse when you have experimental MS/MS spectra from nontargeted metabolomicsVotes: 0GitHub stars: 16
- Ms Ms Spectral Preprocessing And NormalizationUse when you have a labelled dataset of raw MS/MS spectra annotated asVotes: 0GitHub stars: 16
- Ms Ms Spectral Preprocessing Noise RemovalUse when when you have raw MS/MS spectra (from NIST, MassBank, or localVotes: 0GitHub stars: 16
- Ms Ms Spectral Preprocessing NormalizationUse when you have paired MS/MS spectra from unknown and known metabolitesVotes: 0GitHub stars: 16
- Ms Ms Spectrum Annotation PreprocessingUse when you have raw LC-MS/MS data acquired in Data-Dependent AcquisitionVotes: 0GitHub stars: 16
- Ms Ms Spectrum MatchingUse when you have a cleaned and clustered set of LC-MS features (m/z,Votes: 0GitHub stars: 16
- Ms Ms Spectrum Pairwise ComparisonUse when you have millions of MS/MS spectra in mzML, mzXML, or MGF formatVotes: 0GitHub stars: 16
- Ms Ms Spectrum ParsingUse when you have raw or preprocessed MS/MS spectra in one of the supportedVotes: 0GitHub stars: 16
- Ms Ms Spectrum Peak AnnotationUse when you have an experimental MS/MS spectrum (e.g., from MassBankVotes: 0GitHub stars: 16
- Ms Ms Spectrum PredictionUse when you have MS/MS spectra (in MGF format) with required metadataVotes: 0GitHub stars: 16
- Ms Ms Spectrum PreprocessingUse when you have raw or semi-processed MS/MS spectral data from bottom-upVotes: 0GitHub stars: 16
- Ms Ms Spectrum PurificationUse when processing LC-MS/MS data acquired in DDA mode that containsVotes: 0GitHub stars: 16
- Ms Ms Spectrum Statistical Significance TestingUse when you have aligned fragment ion pairs from two MS/MS spectra (viaVotes: 0GitHub stars: 16
- Ms Ms Spectrum Tokenization And RepresentationUse when when you have raw MS/MS spectra in MSP format (or similar) withVotes: 0GitHub stars: 16
- Ms Peak Blank Signal SubtractionUse when you have an MS-DIAL feature table from DDA or DIA LC-MS analysisVotes: 0GitHub stars: 16
- Ms Peak Table Format ValidationUse when immediately after loading a raw GC-MS CSV file and before executingVotes: 0GitHub stars: 16
- Ms Quantitative Analysis StandardsUse when you have raw MS intensity data paired with known-concentrationVotes: 0GitHub stars: 16
- Ms Scan File ParsingUse when you have acquired a Thermo mass spectrometry RAW file (or otherVotes: 0GitHub stars: 16
- Ms Signal Correction Strategy SelectionUse when you have loaded raw MS intensity tables into QuantyFey and observeVotes: 0GitHub stars: 16
- Ms Spectra Dataset PreprocessingUse when when you have a raw or partially processed MS/MS spectra collectionVotes: 0GitHub stars: 16
- Ms Spectra Extraction And Preprocessing'Use when you have raw LC-MS/MS data in mzML or mzXML format and needVotes: 0GitHub stars: 16
- Ms Spectra Inference With Neural NetworksUse when you have MGF or native MS/MS arrays (mz_array, intensity_array,Votes: 0GitHub stars: 16
- Ms Spectral Library Matching'Use when when you have a GC-MS dataset (CSV with columns: Component.RT,Votes: 0GitHub stars: 16
- Ms Spectral Similarity CalculationUse when when comparing two or more MS/MS spectra for compound identification,Votes: 0GitHub stars: 16
- Ms Spectrum Filtering And NormalizationUse when you have raw or parsed tandem MS spectra (MGF, mzML, or in-memoryVotes: 0GitHub stars: 16
- Ms Spectrum Similarity GroupingUse when after computing a sparse pairwise distance matrix from nearestVotes: 0GitHub stars: 16
- Ms Vendor Documentation ExtractionUse when you need to determine the complete set of validated instrument/vendorVotes: 0GitHub stars: 16
- Ms1 Composite Spectra DeconvolutionUse when you have high-resolution MS1 data (mzXML, mzML, or netCDF format)Votes: 0GitHub stars: 16
- Ms1 Data Preprocessing NormalizationUse when when you have loaded raw MS1 data from multiple instrument formatsVotes: 0GitHub stars: 16
- Ms1 Feature Detection And AnnotationUse when you have FIA-MS, LC-MS, or GC-MS full-scan data in mzML formatVotes: 0GitHub stars: 16
- Ms1 Feature ExtractionUse when when you have an LC-HRMS feature table (with m/z values, retentionVotes: 0GitHub stars: 16
- Ms1 Feature Peak Detection In Full ScanUse when you have merged MS1 spectra (output from spectral binning/mergingVotes: 0GitHub stars: 16
- Ms1 Feature Ranking And ExtractionUse when when you have raw LC-MS data files and need to identify whichVotes: 0GitHub stars: 16
- Ms1 Full Scan Acquisition SimulationUse when when you need to prototype, test, or benchmark MS1-only acquisitionVotes: 0GitHub stars: 16
- Ms1 Scan Extraction And FilteringUse when you have a Thermo Fisher Scientific .raw file from an OrbitrapVotes: 0GitHub stars: 16
- Ms1 Spectral Annotation Chemical SpaceUse when you have (1) a peaklist from untargeted LC/HRMS analysis withVotes: 0GitHub stars: 16
- Ms1 Spectrum SimulationUse when when you need to generate synthetic LC-MS/MS data to test fragmentationVotes: 0GitHub stars: 16
- Ms1 Spectrum SubsettingUse when after generating a scan index from a Thermo Fisher OrbitrapVotes: 0GitHub stars: 16
- Ms2 Annotation InterpretationUse when after GNPS spectral library search has returned matched chemicalVotes: 0GitHub stars: 16
- Ms2 Data Preprocessing PipelineUse when you have raw MS2 spectra files (mzML, mgf, msp, mzxml) thatVotes: 0GitHub stars: 16
- Ms2 DereplicationUse when you have MS2 tandem mass spectrometry data in .mzML format andVotes: 0GitHub stars: 16
- Ms2 Diagnostic Fragment MatchingUse when you have centroided MS2 spectra from data-dependent LC- or GC-HRMSVotes: 0GitHub stars: 16