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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Missing Value Imputation With NaUse when you are implementing a custom MsBackend subclass for the SpectraVotes: 0GitHub stars: 16
- Missing Value Replacement By Feature MinimumUse when after loading a feature table into memory when the table containsVotes: 0GitHub stars: 16
- Mixture Spectrum ComparisonUse when you have an observed NMR mixture spectrum and one or more candidateVotes: 0GitHub stars: 16
- Mnar Data HandlingUse when you have metabolomics data (targeted LC/MS or untargeted GC/MS)Votes: 0GitHub stars: 16
- Mobility Dimension Interpolation For Peak ResolutionUse when working with raw multiplexed IM-MS data (UIMF or Agilent MassHunterVotes: 0GitHub stars: 16
- Mobility Scale TransformationUse when analyzing CE-MS(/MS) data where electroosmotic flow fluctuationsVotes: 0GitHub stars: 16
- Modality Contribution QuantificationUse when when you have a trained multitask model that accepts multipleVotes: 0GitHub stars: 16
- Model Ablation Study DesignUse when you need to measure how much a specific model capability orVotes: 0GitHub stars: 16
- Model Artifact PersistenceUse when after a deep neural network model has completed training onVotes: 0GitHub stars: 16
- Model Checkpoint PersistenceUse when training a Transformer or neural network model on a large datasetVotes: 0GitHub stars: 16
- Model Checkpoint SerializationUse when after successfully training a spectrum prediction model (FFNVotes: 0GitHub stars: 16
- Model Comparison EvaluationUse when when you have multiple candidate spectrum prediction modelsVotes: 0GitHub stars: 16
- Model Generalizability AssessmentUse when you have a pre-trained GNN model for CCS prediction and needVotes: 0GitHub stars: 16
- Model Generalizability EvaluationUse when you have a pre-trained or newly retrained graph neural networkVotes: 0GitHub stars: 16
- Model Generalization Assessment Across Molecular Size RegimesUse when a deep learning model for molecular structure prediction (e.g.,Votes: 0GitHub stars: 16
- Model Hyperparameter Transfer And TuningUse when you have a trained baseline GNN model with established hyperparametersVotes: 0GitHub stars: 16
- Model Inference And TokenizationUse when you have MS/MS spectra in .msp format and need to retrieve similarVotes: 0GitHub stars: 16
- Model Metadata ExtractionUse when when you need to programmatically interface with a TensorFlowVotes: 0GitHub stars: 16
- Model Metadata Schema InspectionUse when when preparing to send peak data (1H and 13C NMR measurements)Votes: 0GitHub stars: 16
- Model Metadata Schema VerificationUse when before submitting peak data or other inputs to a machine learningVotes: 0GitHub stars: 16
- Model Uncertainty Quantification VarianceUse when when you have predictions from multiple independently trainedVotes: 0GitHub stars: 16
- Model Validation And Performance EvaluationUse when after training a MEISTER deep learning reconstruction modelVotes: 0GitHub stars: 16
- Model Validation Regression MetricsUse when after training a deep-learning model on paired MS/MS spectraVotes: 0GitHub stars: 16
- Model Weight Loading And DeploymentUse when you have a pre-trained MSGO model checkpoint (PFAS or lipidVotes: 0GitHub stars: 16
- Modification Notation InterpretationUse when you have a ProForma 2.0 peptidoform string (e.g., DLTDYLM[Oxidation]K)Votes: 0GitHub stars: 16
- Modification Site LocalizationUse when you have a pair of MS/MS spectra—one from a known compound andVotes: 0GitHub stars: 16
- Modular Fragmentor Interface ConfigurationUse when you need to simulate LC-MS/MS spectra for a specific biomoleculeVotes: 0GitHub stars: 16
- Modularity Optimization ClusteringUse when after MS-DIAL peak character estimation has grouped LC-MS featuresVotes: 0GitHub stars: 16
- Modulation Parameter ConfigurationUse when you have a raw GCxGC-MS chromatogram in NetCDF format (.cdfVotes: 0GitHub stars: 16
- Module Coverage MappingUse when evaluating whether a mass spectrometry data analysis platformVotes: 0GitHub stars: 16
- Module Dispatch Architecture AnalysisUse when when you need to understand how a multi-instrument mass spectrometryVotes: 0GitHub stars: 16
- Module Import TestingUse when releasing a new version of a Python package, validating packagingVotes: 0GitHub stars: 16
- Module Loader ImplementationUse when you have mass spectrometry imaging data in multiple vendor orVotes: 0GitHub stars: 16
- Module Refactoring And Legacy Code RemovalUse when when a major version release (e.g., v1.x → v2.0.0) deprecatesVotes: 0GitHub stars: 16
- Molecular Candidate RankingUse when after a trained CNN model has generated molecular embeddingsVotes: 0GitHub stars: 16
- Molecular Ccs Prediction Model TrainingUse when you have a curated dataset of small molecules with SMILES, optionalVotes: 0GitHub stars: 16
- Molecular Class Annotation For NetworksUse when after molecular formulas have been assigned to detected peaksVotes: 0GitHub stars: 16
- Molecular Complexity Metric ComputationUse when you have a formula-assigned FT-ICR MS dataset (CSV or tab-delimitedVotes: 0GitHub stars: 16
- Molecular Conformer Generation And OptimizationUse when you have SMILES strings or 2D molecular structures of N-Me derivedVotes: 0GitHub stars: 16
- Molecular Conformer PreprocessingUse when you have a set of molecular SMILES strings and need to prepareVotes: 0GitHub stars: 16
- Molecular Connectivity InferenceUse when you have 1D ¹H and/or ¹³C NMR spectra (as preprocessed numericalVotes: 0GitHub stars: 16
- Molecular Database Loading And ParsingUse when when setting up a ViMMS chemical sampling environment and youVotes: 0GitHub stars: 16
- Molecular Dataset Partitioning And PreprocessingUse when you have raw molecular datasets (e.g., METLIN-CCS, CCSBase)Votes: 0GitHub stars: 16
- Molecular Descriptor ComputationUse when when you have a query mass spectrum and a set of candidate molecularVotes: 0GitHub stars: 16
- Molecular Descriptor ExtractionUse when you have a collection of chemical structures in SMILES formatVotes: 0GitHub stars: 16
- Molecular Descriptor Graph RepresentationUse when when you need to train or evaluate a graph neural network forVotes: 0GitHub stars: 16
- Molecular Descriptor IndexingUse when when you have a collection of molecular structures (SMILES orVotes: 0GitHub stars: 16
- Molecular Family Graph ConstructionUse when you have downloaded and extracted a GNPS archive (from METABOLOMICS-SNETS,Votes: 0GitHub stars: 16
- Molecular Family Grouping AnalysisUse when you have untargeted metabolomics peak intensity data and spectralVotes: 0GitHub stars: 16
- Molecular Fingerprint Extraction And VectorizationUse when you have annotated metabolite structures (with SMILES strings)Votes: 0GitHub stars: 16