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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Metabolomics Data Format HandlingUse when you have raw LC-MS data in mzML or equivalent binary formatVotes: 0GitHub stars: 16
- Metabolomics Data Format ValidationUse when you have a tab-delimited metabolomics data file (raw measurementVotes: 0GitHub stars: 16
- Metabolomics Data FormattingUse when after running feature clustering (Gravity) or drift correctionVotes: 0GitHub stars: 16
- Metabolomics Data Input ValidationUse when when importing a tab-delimited or Sciex OS text export metabolomicsVotes: 0GitHub stars: 16
- Metabolomics Data Integration With Metabolic NetworksUse when you have measured intracellular metabolite concentrations (e.g.,Votes: 0GitHub stars: 16
- Metabolomics Data Integration With XcmsUse when you have untargeted LC-MS metabolomics data preprocessed withVotes: 0GitHub stars: 16
- Metabolomics Data Loading And FormattingUse when you have raw metabolomics count data (e.g., from mass spectrometryVotes: 0GitHub stars: 16
- Metabolomics Data Output FormattingUse when after completing feature annotation with the annotateRC functionVotes: 0GitHub stars: 16
- Metabolomics Data PreprocessingUse when you have raw LC/HRMS data files in mzXML, mzML, or netCDF formatVotes: 0GitHub stars: 16
- Metabolomics Data ProcessingUse when when you have raw or partially processed metabolomics data (featureVotes: 0GitHub stars: 16
- Metabolomics Data Quality AssessmentUse when after consolidating aligned LC-MS peaks into a quantitativeVotes: 0GitHub stars: 16
- Metabolomics Data Quality MetricsUse when you have a Sciex Multiquant (≥v3.0.3) txt export containingVotes: 0GitHub stars: 16
- Metabolomics Data RepresentationUse when you have a raw MGF file containing fragmented LC-MS-MS metabolomicsVotes: 0GitHub stars: 16
- Metabolomics Data StandardizationUse when you have raw 1D NMR spectral data (urine, worm, or other biologicalVotes: 0GitHub stars: 16
- Metabolomics Data ValidationUse when you have raw or semi-processed m/z peak lists (positive andVotes: 0GitHub stars: 16
- Metabolomics Database Search And Formula MatchingUse when after you have detected LC-MS features, grouped them into empiricalVotes: 0GitHub stars: 16
- Metabolomics Dataset Handling MassiveUse when you are beginning a non-targeted metabolomics analysis and needVotes: 0GitHub stars: 16
- Metabolomics Experiment Object HandlingUse when when converting raw metabolomics data from external formatsVotes: 0GitHub stars: 16
- Metabolomics Feature Detection And AlignmentUse when you have raw metabolomics mass spectrometry data in mzML orVotes: 0GitHub stars: 16
- Metabolomics Feature Extraction And Export'Use when you have raw LC-MS data (mzXML format or pre-computed featureVotes: 0GitHub stars: 16
- Metabolomics Feature Integration AssessmentUse when after XCMS peak picking and fillPeaks() when you have xcmsEICVotes: 0GitHub stars: 16
- Metabolomics Feature Intensity NormalizationUse when after peak detection and feature table construction (rows =Votes: 0GitHub stars: 16
- Metabolomics Feature Matrix FilteringUse when you have an aligned MemoMatrix (sample-by-feature occurrenceVotes: 0GitHub stars: 16
- Metabolomics Feature PreprocessingUse when when you have raw profile LC-MS data in .mzML format and needVotes: 0GitHub stars: 16
- Metabolomics Feature Quality AssessmentUse when after drift correction and before missing value imputation whenVotes: 0GitHub stars: 16
- Metabolomics Feature Selection Significance FilteringUse when you have fitted an MB-PLS model on multi-assay LC-MS intensityVotes: 0GitHub stars: 16
- Metabolomics Feature Table ConversionUse when you have generated a feature table via mzrtsim() with simulatedVotes: 0GitHub stars: 16
- Metabolomics Feature Table CurationUse when you have a raw feature table (TSV/CSV) derived from LC-MS peakVotes: 0GitHub stars: 16
- Metabolomics Feature Table FilteringUse when when you have a raw LC-MS peak table imported from vendor softwareVotes: 0GitHub stars: 16
- Metabolomics Feature TransformationUse when when you have a feature intensity table (samples × compounds)Votes: 0GitHub stars: 16
- Metabolomics File Format ParsingUse when you have mwTab-formatted files from the Metabolomics WorkbenchVotes: 0GitHub stars: 16
- Metabolomics Functional Prediction Workflow ValidationUse when a Python-based metabolomics analysis package has been relocatedVotes: 0GitHub stars: 16
- Metabolomics Group Comparison StatisticsUse when you have a metabolomics matrix with metabolites as rows andVotes: 0GitHub stars: 16
- Metabolomics Imputation Method ApplicationUse when your metabolomics dataset (LC/MS or GC/MS) contains missingVotes: 0GitHub stars: 16
- Metabolomics Intensity NormalizationUse when your input is a raw metabolomics intensity matrix (compoundsVotes: 0GitHub stars: 16
- Metabolomics Lcms Data PreprocessingUse when when you have raw LC-MS metabolomics data from multiple diseaseVotes: 0GitHub stars: 16
- Metabolomics Library Generation PipelineUse when when you have cloned or accessed the Reverse_metabolomics_library_generationVotes: 0GitHub stars: 16
- Metabolomics Matrix ManipulationUse when you have a raw metabolomics abundance table (e.g., LC/MS orVotes: 0GitHub stars: 16
- Metabolomics Model Coefficient ApplicationUse when you have a matrix of Nightingale Health 1H-NMR metabolomicsVotes: 0GitHub stars: 16
- Metabolomics Model Performance ComparisonUse when you have trained multiple machine learning classifiers (e.g.,Votes: 0GitHub stars: 16
- Metabolomics Noise Perturbation SimulationUse when when benchmarking or validating a pathway analysis method (suchVotes: 0GitHub stars: 16
- Metabolomics Npp Reliability AssessmentUse when you have completed NPP runs from one or more metabolomics toolsVotes: 0GitHub stars: 16
- Metabolomics Parameter ExtractionUse when you have raw untargeted metabolomics data in mzML, mzXML, orVotes: 0GitHub stars: 16
- Metabolomics Peak Data Normalization And HandlingUse when when you have raw peak intensity matrices from metabolomicsVotes: 0GitHub stars: 16
- Metabolomics Peak Detection ConfigurationUse when when preparing to process raw LC-HRMS metabolomics data (.mzMLVotes: 0GitHub stars: 16
- Metabolomics Peak Table LoadingUse when you have raw peak tables exported from a tandem mass spectrometryVotes: 0GitHub stars: 16
- Metabolomics Preprocessing NormalizationUse when you have acquired raw SIMS (secondary ion mass spectrometry)Votes: 0GitHub stars: 16
- Metabolomics Quality Control Report GenerationUse when after completing outlier detection, batch correction, and qualityVotes: 0GitHub stars: 16
- Metabolomics Quantification Table ProcessingUse when you have a quantification table (rows = metabolite features,Votes: 0GitHub stars: 16
- Metabolomics Sample ComparisonUse when you have a MemoMatrix (sample-by-fingerprint matrix) from alignedVotes: 0GitHub stars: 16