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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Metabolite Annotation By Chromatographic BehaviorUse when when you have an untargeted metabolomics dataset from HPLC–MSVotes: 0GitHub stars: 16
- Metabolite Annotation Confidence AssignmentUse when you have a feature intensity table with feature metadata (m/z,Votes: 0GitHub stars: 16
- Metabolite Annotation Ensemble RankingUse when you have ESI/LC-MS test spectra requiring candidate metaboliteVotes: 0GitHub stars: 16
- Metabolite Annotation Integration Across DatabasesUse when you have MZmine-aligned features with m/z and retention time,Votes: 0GitHub stars: 16
- Metabolite Annotation Mlp Gnn EnsembleUse when you have ESI/LC-MS test spectra requiring metabolite annotationVotes: 0GitHub stars: 16
- Metabolite Annotation Network ArchitectureUse when when annotating large-scale untargeted metabolomics datasetsVotes: 0GitHub stars: 16
- Metabolite Annotation Result ExportUse when after running the annotateRC function on LC-MS All-ion fragmentationVotes: 0GitHub stars: 16
- Metabolite Annotation ScoringUse when you have a feature table with candidate metabolite annotationsVotes: 0GitHub stars: 16
- Metabolite Annotation Taxonomic IntegrationUse when you have paired metabolomics data (MS/MS spectra and featureVotes: 0GitHub stars: 16
- Metabolite Annotation ValidationUse when after running in silico annotation tools (SIRIUS, ISDB) or spectralVotes: 0GitHub stars: 16
- Metabolite Benchmark Dataset ValidationUse when after mzRAPP has exported a benchmark CSV file from processingVotes: 0GitHub stars: 16
- Metabolite Biomarker Classification Via Unsupervised ProjectionUse when after preprocessing GCxGC-MS chromatograms (smoothing, baselineVotes: 0GitHub stars: 16
- Metabolite Candidate Matching'Use when you have: (1) a set of predicted candidate metabolites withVotes: 0GitHub stars: 16
- Metabolite Candidate Ranking By ConfidenceUse when you have a set of candidate metabolites for an unknown compoundVotes: 0GitHub stars: 16
- Metabolite Candidate Ranking InterpretationUse when after running annotateRC() on LC-MS AIF features, when you needVotes: 0GitHub stars: 16
- Metabolite Candidate Ranking Likelihood ScoringUse when you have a query mass spectrum matched to multiple candidateVotes: 0GitHub stars: 16
- Metabolite Candidate RankingUse when you have an untargeted mass spectrometry spectrum (MS/MS data)Votes: 0GitHub stars: 16
- Metabolite Chemodiversity Index Calculation And InterpretationUse when you have peak-abundance data (after molecular formula assignment,Votes: 0GitHub stars: 16
- Metabolite Cluster EvaluationUse when after running RAMClustR clustering on XCMS-detected LC-MS featuresVotes: 0GitHub stars: 16
- Metabolite Cluster Export FormattingUse when after running do.findmain on a RAMClustR-clustered object toVotes: 0GitHub stars: 16
- Metabolite Cluster Identification From Correlated FeaturesUse when after preprocessing, imputation, and batch correction of LC-MSVotes: 0GitHub stars: 16
- Metabolite Composition Comparison Across TreatmentsUse when you have normalized peak intensity tables from FT-ICR MS dataVotes: 0GitHub stars: 16
- Metabolite Compound List Mapping With Adduct AssignmentUse when when you have mzML files from targeted or untargeted metabolomicsVotes: 0GitHub stars: 16
- Metabolite Concentration To Spectrum MappingUse when when you have a list of known metabolite concentrations andVotes: 0GitHub stars: 16
- Metabolite Cv Ratio CalculationUse when after normalizing a metabolomic feature matrix when you haveVotes: 0GitHub stars: 16
- Metabolite Data Log TransformationUse when you have raw or baseline-corrected metabolite abundance measurementsVotes: 0GitHub stars: 16
- Metabolite Database ConstructionUse when when performing untargeted metabolomics annotation at scaleVotes: 0GitHub stars: 16
- Metabolite Database Embedding LookupUse when when you have paired tandem MS spectra and known molecular structuresVotes: 0GitHub stars: 16
- Metabolite Database File FormattingUse when after generating or filtering transformation products usingVotes: 0GitHub stars: 16
- Metabolite Database Identifier NormalizationUse when you have metabolomics metadata in mwTab or tabular format withVotes: 0GitHub stars: 16
- Metabolite Database IntegrationUse when you need to construct a reference metabolomics database fromVotes: 0GitHub stars: 16
- Metabolite Database MatchingUse when after peak networks have been identified and clustered fromVotes: 0GitHub stars: 16
- Metabolite Dataset PreprocessingUse when you have raw NMR metabolomics measurements paired with pre-analyticalVotes: 0GitHub stars: 16
- Metabolite Detection And Acquisition Performance BenchmarkingUse when you have simulated or experimental mzML data from two or moreVotes: 0GitHub stars: 16
- Metabolite Detection Frequency EstimationUse when after loading spatial metabolomics data (from CSV, imzML, orVotes: 0GitHub stars: 16
- Metabolite Detection Matrix ConstructionUse when after GNPS spectral library matching has been completed on aVotes: 0GitHub stars: 16
- Metabolite Distance Metric CalculationUse when you have normalized peak intensity tables from FT-ICR MS dataVotes: 0GitHub stars: 16
- Metabolite Edge Scoring Dbedges BioedgesUse when you have a measured m/z value from spatially-resolved metabolomicsVotes: 0GitHub stars: 16
- Metabolite False Positive FilteringUse when you have ion-mobility mass spectrometry metabolomics data withVotes: 0GitHub stars: 16
- Metabolite Feature Annotation AggregationUse when after selecting statistically significant features from multi-assayVotes: 0GitHub stars: 16
- Metabolite Feature Annotation MappingUse when after importing raw metabolomics data (e.g., from Metabolon,Votes: 0GitHub stars: 16
- Metabolite Feature Annotation'Use when after MS1 feature extraction from mzXML files when you have:Votes: 0GitHub stars: 16
- Metabolite Feature Anova AnalysisUse when you have normalized abundance data from LC-MS/MS for multipleVotes: 0GitHub stars: 16
- Metabolite Feature Association Across LabelsUse when after PuInc_seeker has identified putative incorporations (m/zVotes: 0GitHub stars: 16
- Metabolite Feature Clustering By Retention TimeUse when after XCMS feature detection, grouping, retention time correction,Votes: 0GitHub stars: 16
- Metabolite Feature Column MappingUse when you have peak-picked LC-MS metabolomics data in a tabular formatVotes: 0GitHub stars: 16
- Metabolite Feature Correspondence ValidationUse when after m/z grouping and pairwise alignment detection when youVotes: 0GitHub stars: 16
- Metabolite Feature Extraction And QuantificationUse when after retention-time correction and data alignment have beenVotes: 0GitHub stars: 16
- Metabolite Feature Extraction XcmsUse when you have one or multiple raw mzXML/mzML files from DDA, DIA,Votes: 0GitHub stars: 16
- Metabolite Feature Filtering By MissingnessUse when you have a raw metabolite abundance matrix (e.g., from MSPrepVotes: 0GitHub stars: 16