Claude Skills by HolobiomicsLab

Use when you have GC–MS data from human breath samples and need to identify

Use when after peak recognition has identified significant m/z signals

Use when after feature extraction and alignment when you have a numerical

Use when you need to run a web application locally (by opening index.html

Use when you have Bruker .d/.baf format mass spectrometry imaging data

Use when you have received a Bruker Solarix FT-ICR raw data directory

Use when you have raw Bruker NMR spectral files (from a Bruker instrument)

Use when you have acquired Bruker Solarix FT-ICR-MS raw data (e.g., ESI_NEG_SRFA.d)

Use when you have Bruker Solarix raw transient data (.d folders containing

Use when you have parsed GO enrichment results (GO term identifiers,

Use when when you need to verify that a GitHub Actions workflow (such

Use when after completing a platform-specific build (e.g., mvn clean

Use when when you have a Windows-only .NET Framework 4.

Use when you need to validate that a repository's automated build and

Use when when you need to validate that a development build release workflow

Use when you have cloned a source repository and need to compile it on

Use when when you have a Python package with source modules that need

Use when when you need to capture a snapshot of a research software project's

Use when you have retrieved a user database entry (sequence or building-block

Use when when you have implemented a binary file format encoder (such

'Use when when you have an indexed gzip-compressed mzML file and need

Use when you have raw mass spectrometry data in mzML or mzXML format

Use when you have a mature C++ library (like OpenMS) with stable APIs

Use when when you need to read proprietary or binary data formats (e.g.,

Use when when integrating an R package that wraps a compiled .NET assembly

Use when after applying deimos.calibration.tunemix() to positive-mode

Use when your experiment contains calibration-line samples with known

Use when you have raw mass spectrometry intensity data from targeted

Use when when you have loaded standard compound MS intensity measurements

Use when after applying polynomial m/z domain recalibration using a reference

Use when after a mass spectrum has been matched against a reference m/z

Use when when you need to understand the computational structure of a

Use when after generating candidate molecular formula and adduct pairs

Use when after querying a formula database (KEGG, PubChem, or user-supplied)

Use when you have an observed m/z value from mass spectrometry imaging

Use when when you have a query MS/MS spectrum (m/z and intensity pairs)

Use when you have an unknown compound's mass spectrum (m/z peaks and

Use when when you have generated a set of predicted metabolite structures

Use when after computing InChIKey and neighbourhood scores for library

Use when you have a query MS/MS spectrum matched against a library and

Use when you have a peak list extracted from MSI data that includes candidate

Use when when rescoring PSMs from a search engine with MS²Rescore and

Use when after compound database dereplication has generated per-spectrum

'Use when you have a query mass spectrum and a set of candidate molecular

Use when when you have raw or unprocessed PubChem compound records and

Use when when you have a large reference MS/MS spectral library (>10k

Use when you have an experimental tandem mass spectrum (m/z and intensity

Use when you have (1) a set of candidate structures generated by in silico

Use when after molecular formula assignment from FT-ICR MS peak data,

Use when you have mass spectrometry imaging data in Cardinal format (versions