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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Mass2motif Probability Distribution LearningUse when when you have preprocessed MS/MS spectra converted to a bag-of-fragmentsVotes: 0GitHub stars: 16
- Mass2motif Substructure MappingUse when you have created a GNPS molecular network (classical or feature-basedVotes: 0GitHub stars: 16
- Massgrid Construction And Validation'Use when after individual mass tracks (EICs) have been extracted fromVotes: 0GitHub stars: 16
- Massql Query GenerationUse when you have trained a shallow decision tree on ChemEcho featureVotes: 0GitHub stars: 16
- Massql Query Language SyntaxUse when you need to search for specific mass spectrometry patterns (e.g.,Votes: 0GitHub stars: 16
- Masst Output VisualizationUse when you have completed one or more domain-specific MASST searchesVotes: 0GitHub stars: 16
- Match Factor Threshold FilteringUse when you have a GC-MS dataset with Match.Factor scores for each detectedVotes: 0GitHub stars: 16
- Matlab Data Structure DesignUse when you have multiple CDF files containing mass spectrometry imagingVotes: 0GitHub stars: 16
- Matlab Package ExecutionUse when you have two separate LC-MS untargeted metabolomic feature datasetsVotes: 0GitHub stars: 16
- Matlab Scientific ComputingUse when you have mass spectrometry data in mzXML or mzML format andVotes: 0GitHub stars: 16
- Matlab Workspace InitializationUse when when you have mass spectrometry imaging root datasets pairedVotes: 0GitHub stars: 16
- Matplotlib Bokeh Plotly Backend SwitchingUse when when you have mass spectrometry data (chromatograms, spectra,Votes: 0GitHub stars: 16
- Matplotlib Figure Customization'Use when when rendering spectrum data (m/z vs. intensity arrays) fromVotes: 0GitHub stars: 16
- Matplotlib Heatmap RenderingUse when when you have a confusion matrix (predicted vs. ground-truthVotes: 0GitHub stars: 16
- Matplotlib Static Figure GenerationUse when you have mass spectrometry data in a pandas DataFrame with retentionVotes: 0GitHub stars: 16
- Matrix Ion Spatial Distribution VisualizationUse when after rMSIcleanup has classified ions as matrix-related or non-matrix,Votes: 0GitHub stars: 16
- Matrix Structure Validation And QcUse when after executing memo_from_unaligned or memo_from_aligned functionsVotes: 0GitHub stars: 16
- Matrix Subsetting With Index ReorderingUse when when you need to subset a backend containing multiple MS spectraVotes: 0GitHub stars: 16
- Maximum Weight Matching OptimizationUse when you have computed pairwise similarity or mass difference scoresVotes: 0GitHub stars: 16
- Mb Vip Feature Importance RankingUse when after fitting a Multi-Block PLS (MB-PLS) discriminant or regressionVotes: 0GitHub stars: 16
- Md Defect Ratio CalculationUse when you have a feature table from LC- or GC-HRMS data (either detectedVotes: 0GitHub stars: 16
- Mean Intensity AggregationUse when after importing imzML or vendor-specific MSI data into napariVotes: 0GitHub stars: 16
- Memo Ms Api Usage And Parameter ConfigurationUse when you have aligned feature tables (CSV format) with correspondingVotes: 0GitHub stars: 16
- Memomatrix Object HandlingUse when you have generated one or more MemoMatrix objects (MS2 fingerprintVotes: 0GitHub stars: 16
- Memory Efficient Pairwise StatisticsUse when you have an MSI intensity matrix (msimat object) and an annotatedVotes: 0GitHub stars: 16
- Memory Mapped File Selection StrategyUse when initializing a Dataset object in NMRFx and must decide whichVotes: 0GitHub stars: 16
- Memory Profiling And BenchmarkingUse when when designing or optimizing backends that handle large MS datasetsVotes: 0GitHub stars: 16
- Message Passing Variant Selection And AdaptationUse when you have a baseline GNN model for predicting a continuous molecularVotes: 0GitHub stars: 16
- Metabcombiner Object ConstructionUse when you have two peak-picked, conventionally aligned untargetedVotes: 0GitHub stars: 16
- Metabdata Object HandlingUse when you have a raw peak-picked untargeted LC-MS dataframe with columnsVotes: 0GitHub stars: 16
- Metabolic Age Prediction From Nmr FeaturesUse when you have Nightingale Health 1H-NMR metabolomics data (featureVotes: 0GitHub stars: 16
- Metabolic Feature Identification From Tandem SpectraUse when when processing data with available MS2 spectra (DDA acquisition)Votes: 0GitHub stars: 16
- Metabolic Ion Peak FilteringUse when you have a raw or extracted peak feature table (CSV or tabularVotes: 0GitHub stars: 16
- Metabolic Marker IdentificationUse when after batch effect removal and sample integration, when youVotes: 0GitHub stars: 16
- Metabolic Model Constraint SpecificationUse when you have a generic constraint-based metabolic model (SBML format)Votes: 0GitHub stars: 16
- Metabolic Network Edge ConstructionUse when when building a comprehensive chemical knowledge base for massVotes: 0GitHub stars: 16
- Metabolic Network Graph ConstructionUse when when you have an untargeted metabolomics feature table (m/zVotes: 0GitHub stars: 16
- Metabolic Network MappingUse when you have an untargeted metabolomics feature table (with m/z,Votes: 0GitHub stars: 16
- Metabolic Parameter VisualizationUse when when you have paired NMR metabolite measurements and correspondingVotes: 0GitHub stars: 16
- Metabolic Pathway Database QueryingUse when you have a ranked list of metabolite identifiers (PubChemCIDs,Votes: 0GitHub stars: 16
- Metabolic Reaction Classification By Regulatory LayerUse when you have integrated transcriptomics, intracellular metabolomics,Votes: 0GitHub stars: 16
- Metabolights Dataset RetrievalUse when you have a MetaboLights dataset identifier (e.g., MTBLS1124)Votes: 0GitHub stars: 16
- Metabolite Abundance Drift CorrectionUse when you have a raw LCMS nontargeted metabolomics abundance tableVotes: 0GitHub stars: 16
- Metabolite Abundance Normalization Across ConditionsUse when you have intracellular metabolomics abundance data (measuredVotes: 0GitHub stars: 16
- Metabolite Abundance Normalization ComparisonUse when you have normalized peak intensities using MetaboDirect's dataVotes: 0GitHub stars: 16
- Metabolite Abundance NormalizationUse when after loading a raw metabolite abundance table (rows=metabolites,Votes: 0GitHub stars: 16
- Metabolite Abundance StratificationUse when you have a peak-abundance matrix from FT-ICR MS (peaks as rows,Votes: 0GitHub stars: 16
- Metabolite Abundance Threshold FilteringUse when you have intracellular metabolomics data paired with constraint-basedVotes: 0GitHub stars: 16
- Metabolite Adduct Correlation Spatial AnalysisUse when you have annotated mass-difference peaks with known adduct identitiesVotes: 0GitHub stars: 16
- Metabolite Annotation At ScaleUse when you have extracted a large feature set of m/z values (hundredsVotes: 0GitHub stars: 16