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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Mass Spectrometry Plot Type SpecializationUse when you have a Pandas DataFrame containing mass spectrometry dataVotes: 0GitHub stars: 16
- Mass Spectrometry Polarity FilteringUse when when processing centroided .mzML LC–MS runs with a multi-polarityVotes: 0GitHub stars: 16
- Mass Spectrometry Precursor IdentificationUse when when you need to locate and extract quantitative retention timeVotes: 0GitHub stars: 16
- Mass Spectrometry Prediction ModelingUse when when you have a collection of compound structures in SDF formatVotes: 0GitHub stars: 16
- Mass Spectrometry Preprocessing Quality ControlUse when immediately after importing raw peak tables and metadata fromVotes: 0GitHub stars: 16
- Mass Spectrometry PreprocessingUse when when you have raw mass-spectrometry data (precursor m/z, ionizationVotes: 0GitHub stars: 16
- Mass Spectrometry Qc Criteria Definition'Use when when setting up a new LC-MS QC workflow or modifying existingVotes: 0GitHub stars: 16
- Mass Spectrometry Quality Metrics ExtractionUse when you have centroided .mzML LC–MS data, a validated target compoundVotes: 0GitHub stars: 16
- Mass Spectrometry Quantification ExtractionUse when you have raw LipidSearch or LIQUID output files (CSV or TSVVotes: 0GitHub stars: 16
- Mass Spectrometry QuantificationUse when you have measured MS intensity data from unknown samples andVotes: 0GitHub stars: 16
- Mass Spectrometry Query FormulationUse when you have a high-resolution LC-MS/MS experiment with a measuredVotes: 0GitHub stars: 16
- Mass Spectrometry Query SemanticsUse when when you need to express complex mass spectrometry search patternsVotes: 0GitHub stars: 16
- Mass Spectrometry Raw Data EncodingUse when you have generated or obtained a two-dimensional mass-spectrometryVotes: 0GitHub stars: 16
- Mass Spectrometry Raw Data PreprocessingUse when when you have raw DIA mass spectrometry data files (.raw, .d,Votes: 0GitHub stars: 16
- Mass Spectrometry Raw File HandlingUse when you have raw MS data files from Thermo Orbitrap or other vendorVotes: 0GitHub stars: 16
- Mass Spectrometry Reference Database IntegrationUse when you have individual MS/MS spectra or batch .mgf files from untargetedVotes: 0GitHub stars: 16
- Mass Spectrometry Reference Standard AlignmentUse when you have positive- or negative-mode tunemix reference data (withVotes: 0GitHub stars: 16
- Mass Spectrometry Reference Standard MappingUse when you have acquired tunemix data (positive or negative ion mode,Votes: 0GitHub stars: 16
- Mass Spectrometry Result TabulationUse when after executing a MassQL query against mzML mass spectrometryVotes: 0GitHub stars: 16
- Mass Spectrometry Scan Extraction By TargetUse when you have raw LC-MS/MS chromatogram files in mzML/mzXML formatVotes: 0GitHub stars: 16
- Mass Spectrometry Scan IndexingUse when you have a Thermo Fisher Scientific .raw file and need to (1)Votes: 0GitHub stars: 16
- Mass Spectrometry Scoring Method ValidationUse when you have high-resolution LC-MS data processed through both XCMSVotes: 0GitHub stars: 16
- Mass Spectrometry Screening WorkflowsUse when when you have high-resolution LC-MS or GC-MS data from environmentalVotes: 0GitHub stars: 16
- Mass Spectrometry Spectral AlignmentUse when you have a pair of MS/MS spectra—one from a known compound andVotes: 0GitHub stars: 16
- Mass Spectrometry Spectral Embedding LearningUse when when you have preprocessed MS/MS spectral pairs (peak intensitiesVotes: 0GitHub stars: 16
- Mass Spectrometry Spectral PreprocessingUse when you have raw mass spectrometry spectra from an unknown analyteVotes: 0GitHub stars: 16
- Mass Spectrometry Spectrum PreprocessingUse when when you have raw LC–QTOF wastewater spectra (or other realVotes: 0GitHub stars: 16
- Mass Spectrometry Spectrum Quality FilteringUse when compiling or harmonizing MS/MS spectral libraries from multipleVotes: 0GitHub stars: 16
- Mass Spectrometry Spectrum TokenizationUse when you have pre-processed MS/MS spectra and need to prepare themVotes: 0GitHub stars: 16
- Mass Spectrometry Spectrum VectorizationUse when you have high-resolution MS/MS spectra in mzML, mzXML, or MGFVotes: 0GitHub stars: 16
- Mass Spectrometry Structural AnnotationUse when after identifying statistically significant features (e.Votes: 0GitHub stars: 16
- Mass Spectrometry Substructure AssignmentUse when after Mass2Motif discovery via LDA on preprocessed MS/MS spectra,Votes: 0GitHub stars: 16
- Mass Spectrometry Target List PreparationUse when you have a raw .xlsx or tabular file listing candidate compoundsVotes: 0GitHub stars: 16
- Mass Spectrometry Tolerance CalibrationUse when after generating a feature table from mzML data (via Asari)Votes: 0GitHub stars: 16
- Mass Spectrometry Tolerance Window CalibrationUse when after feature extraction from raw LC-MS or GC-MS data (usingVotes: 0GitHub stars: 16
- Mass Spectrometry Transition Data FormattingUse when when you have raw mass spectrometry transition data from a triple-quadrupoleVotes: 0GitHub stars: 16
- Mass Spectrometry Tune Data LoadingUse when you have positive- or negative-mode tune reference compoundVotes: 0GitHub stars: 16
- Mass Spectrometry Visualization Backend Comparison'Use when you have a mass spectrometry visualization library that claimsVotes: 0GitHub stars: 16
- Mass Spectrometry Workflow Orchestration SnakemakeUse when when you have a collection of mzML.gz files from a multidimensionalVotes: 0GitHub stars: 16
- Mass Spectrometry Workflow OrchestrationUse when you have a collection of mzML or mzML.gz files from LC-IMS-MS/MSVotes: 0GitHub stars: 16
- Mass Spectrometry Wrapper Function DesignUse when when you have a Spectra-based MS analysis workflow in R butVotes: 0GitHub stars: 16
- Mass Spectrum Adduct AssignmentUse when when analyzing tandem mass spectra with unknown precursor adductVotes: 0GitHub stars: 16
- Mass Spectrum Averaging And ProcessingUse when you have loaded a Bruker Solarix transient file (.d format withVotes: 0GitHub stars: 16
- Mass Spectrum Basepeak ExtractionUse when when you have Thermo Fisher Scientific .raw files from OrbitrapVotes: 0GitHub stars: 16
- Mass Spectrum Binning And VectorizationUse when when preparing MS/MS spectra for neural network training orVotes: 0GitHub stars: 16
- Mass Spectrum Calibration ValidationUse when after applying frequency domain calibration (Ledford, linear,Votes: 0GitHub stars: 16
- Mass Spectrum Database MatchingUse when you have centroided LC-MS/MS spectral data (in MGF, mzXML, mzML,Votes: 0GitHub stars: 16
- Mass Spectrum De Novo AnalysisUse when you have an unknown MS/MS spectrum (m/z and intensity pairs)Votes: 0GitHub stars: 16
- Mass Spectrum Embedding GenerationUse when you have cleaned MS/MS spectra (in formats like .mgf, .msp,Votes: 0GitHub stars: 16
- Mass Spectrum Extraction And FormattingUse when you have raw GC-MS data in netCDF or vendor-specific binaryVotes: 0GitHub stars: 16