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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Mass Spectrometry Data PreprocessingUse when you have raw LCMS data in mzML or mzXML format from DDA, DIA,Votes: 0GitHub stars: 16
- Mass Spectrometry Data ProcessingUse when you have raw mass spectrometry data in vendor-specific formatsVotes: 0GitHub stars: 16
- Mass Spectrometry Data Quality AssessmentUse when when raw mass spectrometry spectral data has been imported intoVotes: 0GitHub stars: 16
- Mass Spectrometry Data Quality FilteringUse when you have generated a complete feature table from mzML filesVotes: 0GitHub stars: 16
- Mass Spectrometry Data QueryingUse when you have a directory of mzML mass spectrometry files and needVotes: 0GitHub stars: 16
- Mass Spectrometry Data RepresentationUse when you need to store or retrieve mass spectrometry spectra (m/zVotes: 0GitHub stars: 16
- Mass Spectrometry Data SerializationUse when after RAMClustR clustering and molecular weight inference viaVotes: 0GitHub stars: 16
- Mass Spectrometry Data Statistical TestingUse when you have a normalized abundance matrix from LC-MS/MS profilingVotes: 0GitHub stars: 16
- Mass Spectrometry Data Structure ConversionUse when when you have received metabolomics mass-spectrometry data inVotes: 0GitHub stars: 16
- Mass Spectrometry Data Structure DecodingUse when when you have a mzPeak file (uncompressed ZIP archive containingVotes: 0GitHub stars: 16
- Mass Spectrometry Data Structure InterpretationUse when you have converted multidimensional MS data (from Agilent .d,Votes: 0GitHub stars: 16
- Mass Spectrometry Data Structure MappingUse when after feature extraction and peak recognition have producedVotes: 0GitHub stars: 16
- Mass Spectrometry Data Table FormattingUse when when you have raw or processed TWIM-MS data (arrival time andVotes: 0GitHub stars: 16
- Mass Spectrometry Data ValidationUse when when reproducing or validating a tandem mass spectrometry denoisingVotes: 0GitHub stars: 16
- Mass Spectrometry Data Visualization PandasUse when when you have mass spectrometry data (mzML, Bruker .d, or CSV)Votes: 0GitHub stars: 16
- Mass Spectrometry Data Visualization With PandasUse when your input is a Pandas DataFrame containing mass spectrometryVotes: 0GitHub stars: 16
- Mass Spectrometry Data VisualizationUse when after applying retention time, abundance correlation, or EICVotes: 0GitHub stars: 16
- Mass Spectrometry Database SearchUse when you have an unknown mass spectrum (or a representative metaboliteVotes: 0GitHub stars: 16
- Mass Spectrometry Dataset Handling PreprocessingUse when you have raw or semi-processed MS/MS spectra in MSP format (e.g.,Votes: 0GitHub stars: 16
- Mass Spectrometry Dataset Post ProcessingUse when you have a formula-assigned FT-ICR MS dataset (CSV or tab-delimitedVotes: 0GitHub stars: 16
- Mass Spectrometry Deconvolution Algorithm ApplicationUse when you have raw DDA, DIA (MS^E, AIF, SWATH-MS), or MS1-only massVotes: 0GitHub stars: 16
- Mass Spectrometry Domain Specific Language ComprehensionUse when you need to translate user-facing mass spectrometry query intentVotes: 0GitHub stars: 16
- Mass Spectrometry Drift Time ProcessingUse when when you have raw ion mobility-mass spectrometry data (driftVotes: 0GitHub stars: 16
- Mass Spectrometry Embedding GenerationUse when when you have preprocessed MS/MS spectral data (normalized peakVotes: 0GitHub stars: 16
- Mass Spectrometry Feature AnnotationUse when when you have peak-detected LC-MS/MS data (MGF files with MS1Votes: 0GitHub stars: 16
- Mass Spectrometry Feature ClusteringUse when after XCMS feature detection and alignment when you have a CSV-formattedVotes: 0GitHub stars: 16
- Mass Spectrometry Feature CollapsingUse when after XCMS CentWave feature extraction when your feature tableVotes: 0GitHub stars: 16
- Mass Spectrometry Feature DeconvolutionUse when you have a peak table from LC-MS peak picking software (e.Votes: 0GitHub stars: 16
- Mass Spectrometry Feature DeduplicationUse when immediately after MZmine feature detection when you have bothVotes: 0GitHub stars: 16
- Mass Spectrometry Feature Detection ValidationUse when when you have processed LC-HRMS mzML files through a non-targetedVotes: 0GitHub stars: 16
- Mass Spectrometry Feature Extraction From Cardinal ObjectsUse when you have a Cardinal MSImagingExperiment object (e.g., from imzMLVotes: 0GitHub stars: 16
- Mass Spectrometry Feature Extraction Ms1 Ms2Use when when you have raw mzML files from LC-MS/MS metabolomics experimentsVotes: 0GitHub stars: 16
- Mass Spectrometry Feature ExtractionUse when you have raw mzML mass spectrometry data and need to detectVotes: 0GitHub stars: 16
- Mass Spectrometry Feature GroupingUse when after raw data processing and feature extraction (e.g., viaVotes: 0GitHub stars: 16
- Mass Spectrometry Feature Intensity NormalizationUse when after aligning raw mass spectra into a 2D feature intensityVotes: 0GitHub stars: 16
- Mass Spectrometry Feature MappingUse when you have (1) aligned LC-MS/MS feature quantification matrixVotes: 0GitHub stars: 16
- Mass Spectrometry Feature RepresentationUse when after LC-MS feature clustering based on MS-DIAL peak characterVotes: 0GitHub stars: 16
- Mass Spectrometry Feature Similarity ModelingUse when when you have an untargeted metabolomics dataset with MS2 fragmentationVotes: 0GitHub stars: 16
- Mass Spectrometry Feature Table ConstructionUse when you have vendor-independent centroided mzML files from LC- orVotes: 0GitHub stars: 16
- Mass Spectrometry Feature Tree InterpretationUse when after running qiime qemistree make-hierarchy and obtaining aVotes: 0GitHub stars: 16
- Mass Spectrometry File ConversionUse when you have vendor raw mass spectrometry data files (.raw) fromVotes: 0GitHub stars: 16
- Mass Spectrometry File Format ConversionUse when you have raw MS data files in vendor-native format (.raw, .d,Votes: 0GitHub stars: 16
- Mass Spectrometry File Format HandlingUse when when you have Thermo Fisher Scientific Orbitrap .raw files (e.g.,Votes: 0GitHub stars: 16
- Mass Spectrometry File Format ParsingUse when you have raw MS/MS spectral data in one or more standard massVotes: 0GitHub stars: 16
- Mass Spectrometry File Inventory ManagementUse when you have uploaded MS/MS data to MassIVE with validated sample-informationVotes: 0GitHub stars: 16
- Mass Spectrometry File StandardizationUse when you have raw or semi-processed mass-spectrometry peak data fromVotes: 0GitHub stars: 16
- Mass Spectrometry File ValidationUse when after MSConvert has converted vendor-specific raw mass spectrometryVotes: 0GitHub stars: 16
- Mass Spectrometry Format ConversionUse when when you have mass spectrometry spectra in one of the six supportedVotes: 0GitHub stars: 16
- Mass Spectrometry Format ParsingUse when you have mzML or mzXML mass spectrometry data files and needVotes: 0GitHub stars: 16
- Mass Spectrometry Fragment MatchingUse when you have experimental fragment m/z peaklists from Q-ExactiveVotes: 0GitHub stars: 16