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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Mass Calibration Against Reference StandardsUse when when processing raw FT-ICR transient data (e.g., ESI_NEG_SRFA.d)Votes: 0GitHub stars: 16
- Mass Calibration Coefficient ComputationUse when after successfully matching at least 5 reference m/z pointsVotes: 0GitHub stars: 16
- Mass Charge Retention Time ValidationUse when after loading centroided .mzML LC-MS data and creating a targetVotes: 0GitHub stars: 16
- Mass Chromatogram AlignmentUse when after chromatographic peak detection on preprocessed LC-MS data,Votes: 0GitHub stars: 16
- Mass Defect CalculationUse when processing feature lists from LC- or GC-HRMS data (in mzML formatVotes: 0GitHub stars: 16
- Mass Defect Filtering For Chemical ValidityUse when after loading an MS-DIAL peak list (feature table with m/z,Votes: 0GitHub stars: 16
- Mass Defect FilteringUse when after MS-Dial peak picking and feature table construction, whenVotes: 0GitHub stars: 16
- Mass Delta ComputationUse when when you have parsed two or more MS/MS spectra (precursor m/zVotes: 0GitHub stars: 16
- Mass Difference Adduct MatchingUse when after correlation-based feature pairing has identified featureVotes: 0GitHub stars: 16
- Mass Difference Calculation And MatchingUse when you have centroided data-dependent acquisition (DDA) MS2 spectraVotes: 0GitHub stars: 16
- Mass Difference Calculation From Spectral PeaksUse when you have a list of detected masses (m/z peaks) from MALDI-MSVotes: 0GitHub stars: 16
- Mass Difference Network ConstructionUse when you have a preprocessed peak list (m/z values and assigned molecularVotes: 0GitHub stars: 16
- Mass Difference Pairwise CalculationUse when after importing MSI data as an msimat object and having a listVotes: 0GitHub stars: 16
- Mass Difference Pattern MatchingUse when after peak picking and sample alignment when you have an alignedVotes: 0GitHub stars: 16
- Mass Difference Transformation Pair DerivationUse when you have a formula-assigned DOM dataset from FT-ICR MS (or otherVotes: 0GitHub stars: 16
- Mass Distribution Vector CalculationUse when you have raw LC-MS fractional abundances (FAM) data from isotopeVotes: 0GitHub stars: 16
- Mass Error And Retention Time AlignmentUse when when processing low- or high-resolution mass spectrometry dataVotes: 0GitHub stars: 16
- Mass Error Calculation And AssessmentUse when after peak picking and before or after molecular formula assignmentVotes: 0GitHub stars: 16
- Mass Error Calculation And ReportingUse when after molecular formula assignment has been performed on calibratedVotes: 0GitHub stars: 16
- Mass Error Calculation And ValidationUse when when annotating observed mass spectrometry peaks against theoreticalVotes: 0GitHub stars: 16
- Mass Error Calculation'Use when when screening LC-HRMS datasets for suspect compounds: youVotes: 0GitHub stars: 16
- Mass Error Distribution AnalysisUse when after applying polynomial m/z recalibration using a referenceVotes: 0GitHub stars: 16
- Mass Error Threshold CalibrationUse when you have isolated TIC peak regions and need to extract ion chromatogramsVotes: 0GitHub stars: 16
- Mass Error Tolerance Filtering'Use when when annotating full-scan MS or MS imaging data against a metaboliteVotes: 0GitHub stars: 16
- Mass Feature To Node MappingUse when you have an untargeted metabolomics feature table with m/z values,Votes: 0GitHub stars: 16
- Mass Fragment Neutral Loss RepresentationUse when when you have raw or minimally processed MS/MS spectra (in positiveVotes: 0GitHub stars: 16
- Mass Fragment Pattern QueryingUse when after LDA modeling has produced an inferred motifset (JSON format)Votes: 0GitHub stars: 16
- Mass Grid Construction And Mapping'Use when after mass track extraction from individual LC-MS samples,Votes: 0GitHub stars: 16
- Mass Grid Index Traversal And RetrievalUse when when you have constructed a MassGrid (m/z-aligned mass tracksVotes: 0GitHub stars: 16
- Mass Isotopologue Adduct GroupingUse when after sample alignment has established consensus retention timeVotes: 0GitHub stars: 16
- Mass Offset Scanning For Modification DetectionUse when you have a query mass spectrum of unknown modification statusVotes: 0GitHub stars: 16
- Mass Range Constraint ApplicationUse when when generating a virtual chemical mixture for LC-MS/MS simulation,Votes: 0GitHub stars: 16
- Mass Range Filtering For MetabolomicsUse when when preparing a chemical database for virtual or real MS/MSVotes: 0GitHub stars: 16
- Mass Range Window RestrictionUse when you have loaded an MsmsSpectrum object and need to focus analysisVotes: 0GitHub stars: 16
- Mass Recalibration Lock Mass CorrectionUse when converting mzML files to imzML format for imaging mass spectrometryVotes: 0GitHub stars: 16
- Mass Shift Tolerance ScoringUse when when searching for peptide spectra with unknown or open modificationsVotes: 0GitHub stars: 16
- Mass Spec Tolerance Parameter ApplicationUse when when you have a feature table from Orbitrap LC-MS containingVotes: 0GitHub stars: 16
- Mass Spectra Clustering Hyperdimensional SpaceUse when you have large-scale MS/MS spectra datasets (hundreds of thousandsVotes: 0GitHub stars: 16
- Mass Spectra Embedding ExtractionUse when you have tandem mass spectra (MS/MS) in .msp format and needVotes: 0GitHub stars: 16
- Mass Spectra Encoding Neural NetworkUse when you have a collection of MS/MS spectra (in mzML or MGF format)Votes: 0GitHub stars: 16
- Mass Spectra Tokenization Unified VocabularyUse when when you have paired mass spectra and molecular structure dataVotes: 0GitHub stars: 16
- Mass Spectral Component ExtractionUse when raw GC-MS data (netCDF or mzML format) contains overlappingVotes: 0GitHub stars: 16
- Mass Spectral Data AugmentationUse when when you have limited real GC-MS overlapped peak data but needVotes: 0GitHub stars: 16
- Mass Spectral Data FormattingUse when when you have raw mass spectral data in .mgf, .msp, .mzML, orVotes: 0GitHub stars: 16
- Mass Spectral Data ValidationUse when you have raw LC-MS/MS spectral data in vendor formats or unvalidatedVotes: 0GitHub stars: 16
- Mass Spectral Feature AlignmentUse when when you have separate LC-MS peak tables for unlabeled (C12)Votes: 0GitHub stars: 16
- Mass Spectral Feature AnnotationUse when you have m/z values from spatially-resolved mass spectrometryVotes: 0GitHub stars: 16
- Mass Spectral Feature GroupingUse when you have untargeted metabolomics MS/MS spectra from multipleVotes: 0GitHub stars: 16
- Mass Spectral Fingerprint GenerationUse when you have unaligned MS2 spectra from one or more samples (inVotes: 0GitHub stars: 16
- Mass Spectral Library Benchmark ExecutionUse when you have access to the Flash Entropy Search implementation andVotes: 0GitHub stars: 16