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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Mass Spectral M Z AlignmentUse when after you have (1) identified putative labelled features withVotes: 0GitHub stars: 16
- Mass Spectral Matrix PredictionUse when you have raw GC-MS data with overlapped peaks in a specificVotes: 0GitHub stars: 16
- Mass Spectral Metadata HarmonizationUse when you have multiple mass spectral libraries in different formatsVotes: 0GitHub stars: 16
- Mass Spectral Metadata StandardizationUse when you have acquired EI or MS/MS spectral libraries from multipleVotes: 0GitHub stars: 16
- Mass Spectral Missing Word Fraction ComputationUse when when applying a pre-trained Spec2Vec Word2Vec model to new massVotes: 0GitHub stars: 16
- Mass Spectral Network AnnotationUse when you have a GNPS molecular network (classical or feature-based)Votes: 0GitHub stars: 16
- Mass Spectral Peak AnnotationUse when you have centroided MS2 spectra (in mzML format from data-dependentVotes: 0GitHub stars: 16
- Mass Spectral Query SubmissionUse when you have one or more individual MS/MS spectra (in mzML, mzXML,Votes: 0GitHub stars: 16
- Mass Spectral Relationship MatchingUse when after peak detection and feature table generation when you haveVotes: 0GitHub stars: 16
- Mass Spectral Similarity Binning And StratificationUse when you have predicted structural similarity scores (e.g., TanimotoVotes: 0GitHub stars: 16
- Mass Spectral Similarity Scoring Across SamplesUse when after XCMS feature detection, grouping, and retention time correctionVotes: 0GitHub stars: 16
- Mass Spectrometer Simulator ConfigurationUse when when you have a list of chemical compounds (with m/z values,Votes: 0GitHub stars: 16
- Mass Spectrometry Adduct AnnotationUse when you have tabulated pairwise mass differences from a MALDI-MSVotes: 0GitHub stars: 16
- Mass Spectrometry Adduct AssignmentUse when when processing in-silico or experimental MS spectra recordsVotes: 0GitHub stars: 16
- Mass Spectrometry Adduct Nomenclature And Formula TransformationUse when you have a neutral molecular formula (e.g., C3H8O2) and needVotes: 0GitHub stars: 16
- Mass Spectrometry Annotation Engine CustomizationUse when when you have baseline MS/MS peak annotations from a known compoundVotes: 0GitHub stars: 16
- Mass Spectrometry Base Peak IdentificationUse when after PuInc_seeker has identified putative incorporations inVotes: 0GitHub stars: 16
- Mass Spectrometry Benchmark AnalysisUse when you have implemented or modified a tandem mass spectrometryVotes: 0GitHub stars: 16
- Mass Spectrometry Benchmark DesignUse when when claiming that one mass spectrometry processing libraryVotes: 0GitHub stars: 16
- Mass Spectrometry CalibrationUse when after peak detection when you have a detected peaks table withVotes: 0GitHub stars: 16
- Mass Spectrometry Chromatogram ExtractionUse when you have raw profile LC-MS data in .mzML format and need toVotes: 0GitHub stars: 16
- Mass Spectrometry Chromatogram GenerationUse when after MS2 annotation and sample alignment have been completedVotes: 0GitHub stars: 16
- Mass Spectrometry Cluster DetectionUse when you have 32-dimensional GLEAMS embeddings (output from the `gleamsVotes: 0GitHub stars: 16
- Mass Spectrometry Column Polarity FilteringUse when you have a combined EI library (from multiple sources such asVotes: 0GitHub stars: 16
- Mass Spectrometry Compound Annotation Database GenerationUse when after generating transformation products using generateTPs()Votes: 0GitHub stars: 16
- Mass Spectrometry Compound ExtractionUse when you have a preprocessed GC-MS dataset (from spreadOut) withVotes: 0GitHub stars: 16
- Mass Spectrometry Data AlignmentUse when you have two LC-MS feature tables (each containing m/z, retentionVotes: 0GitHub stars: 16
- Mass Spectrometry Data Column MappingUse when you have generated a peak table or feature list from MZmine,Votes: 0GitHub stars: 16
- Mass Spectrometry Data Constraint ValidationUse when implementing replacement methods ($<-, [<-, spectraData<-, mz<-,Votes: 0GitHub stars: 16
- Mass Spectrometry Data Coordinate System ConstructionUse when when you have processed LC-MS/MS spectral data in .mgf formatVotes: 0GitHub stars: 16
- Mass Spectrometry Data ExtractionUse when you have native Thermo Fisher RAW mass spectrometry files andVotes: 0GitHub stars: 16
- Mass Spectrometry Data File ParsingUse when you receive raw MS data files from LC-MS, LC-IMS-MS, directVotes: 0GitHub stars: 16
- Mass Spectrometry Data Format ConversionUse when you have mass spectral libraries from multiple sources (e.g.,Votes: 0GitHub stars: 16
- Mass Spectrometry Data Format HandlingUse when you have raw MRM sample files from an LC-MS/MS instrument andVotes: 0GitHub stars: 16
- Mass Spectrometry Data Format ImportUse when you have raw mass spectrometry data in one of the supportedVotes: 0GitHub stars: 16
- Mass Spectrometry Data Format ParsingUse when you have raw MS/MS spectra in one of the supported exchangeVotes: 0GitHub stars: 16
- Mass Spectrometry Data Formatting'Use when you have raw GC-MS output exported as CSV (containing columns:Votes: 0GitHub stars: 16
- Mass Spectrometry Data Import And ExportUse when use this skill at the start of any mass spectrometry analysisVotes: 0GitHub stars: 16
- Mass Spectrometry Data ImportUse when when beginning a new mass spectrometry analysis workflow withVotes: 0GitHub stars: 16
- Mass Spectrometry Data IntegrationUse when you have multiple mzML or HDF5 feature tables from the sameVotes: 0GitHub stars: 16
- Mass Spectrometry Data InterpretationUse when you have a set of ions already matched to a khipu instance (i.e.,Votes: 0GitHub stars: 16
- Mass Spectrometry Data Loader IntegrationUse when you have mass spectrometry data available in multiple identifierVotes: 0GitHub stars: 16
- Mass Spectrometry Data Loading And FormattingUse when you have raw or curated mass spectrometry data (MS1, MS2, orVotes: 0GitHub stars: 16
- Mass Spectrometry Data LoadingUse when you have raw MS data files from supported instruments (Agilent,Votes: 0GitHub stars: 16
- Mass Spectrometry Data Matrix ConstructionUse when you have raw spatial metabolomics imzML files (paired with .ibdVotes: 0GitHub stars: 16
- Mass Spectrometry Data NormalizationUse when when raw MS/MS spectra from GNPS or similar databases containVotes: 0GitHub stars: 16
- Mass Spectrometry Data Object InstantiationUse when when you have mass spectrometry data stored in non-standardVotes: 0GitHub stars: 16
- Mass Spectrometry Data Parsing Mzml BrukerUse when you have raw mass spectrometry data in mzML or Bruker .d formatVotes: 0GitHub stars: 16
- Mass Spectrometry Data ParsingUse when you have received raw or vendor-converted centroid mzML filesVotes: 0GitHub stars: 16
- Mass Spectrometry Data PreparationUse when you have raw mass spectrometry data in CSV or mzML format andVotes: 0GitHub stars: 16