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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Mass Spectrometry Fragmentation ModelingUse when you are generating synthetic LC-MS/MS data for method validation,Votes: 0GitHub stars: 16
- Mass Spectrometry Fragmentation Pattern DiscoveryUse when you have preprocessed MS/MS spectral data (in positive or negativeVotes: 0GitHub stars: 16
- Mass Spectrometry Fragmentation Pattern ModelingUse when when building a re-usable spectral reference library for lipidomicsVotes: 0GitHub stars: 16
- Mass Spectrometry Image NormalizationUse when after loading a pixel array (NumPy format) and its associatedVotes: 0GitHub stars: 16
- Mass Spectrometry Image PreprocessingUse when you have raw or preprocessed single-channel (2D array) or multi-channelVotes: 0GitHub stars: 16
- Mass Spectrometry Image ReconstructionUse when you have paired .imzML (XML metadata) and .Votes: 0GitHub stars: 16
- Mass Spectrometry Imaging Data ImportUse when you have raw MS imaging data in imzML (continuous or processed)Votes: 0GitHub stars: 16
- Mass Spectrometry Imaging Data InterpretationUse when when you have preprocessed MALDI-MSI data (in msimat format)Votes: 0GitHub stars: 16
- Mass Spectrometry Imaging Data LoadingUse when you have raw or preprocessed MS imaging data archived as anVotes: 0GitHub stars: 16
- Mass Spectrometry Imaging Data ProcessingUse when you have raw or processed MSI data (in imzML or rMSIproc formats)Votes: 0GitHub stars: 16
- Mass Spectrometry Imaging Data RepresentationUse when you have raw mass spectrometry imaging data (2D or 3D spatialVotes: 0GitHub stars: 16
- Mass Spectrometry Imaging Line Scan Data HandlingUse when you have raw line-scan MSI data from a vendor instrument (Agilent,Votes: 0GitHub stars: 16
- Mass Spectrometry Imaging Vendor Format SupportUse when your input mass spectrometry imaging data is in a proprietaryVotes: 0GitHub stars: 16
- Mass Spectrometry Instrument Format CompatibilityUse when you have raw mass spectrometry data from an instrument not yetVotes: 0GitHub stars: 16
- Mass Spectrometry Instrument Resolution ModelingUse when when correcting LC-MS fractional abundances of measured isotopologuesVotes: 0GitHub stars: 16
- Mass Spectrometry Intensity Drift CorrectionUse when mS quantification data exhibits intensity drift—a systematicVotes: 0GitHub stars: 16
- Mass Spectrometry Ion Formula AssignmentUse when when you have a metabolite structure (SMILES or molecular graph)Votes: 0GitHub stars: 16
- Mass Spectrometry Ionization Mode HandlingUse when when you have a feature table from LC-MS preprocessed data (e.g.Votes: 0GitHub stars: 16
- Mass Spectrometry Library CurationUse when when preprocessing a public MS/MS spectral library (e.g., GNPS)Votes: 0GitHub stars: 16
- Mass Spectrometry Library IndexingUse when you have a large MS/MS experiment (mzML format) requiring lipidVotes: 0GitHub stars: 16
- Mass Spectrometry Library MatchingUse when when you have an unknown MS/MS spectrum (with ≥10 peaks, precursorVotes: 0GitHub stars: 16
- Mass Spectrometry Library RankingUse when you have a set of unidentified tandem mass spectra (queries)Votes: 0GitHub stars: 16
- Mass Spectrometry Library Search RetrievalUse when when you have an unknown MSMS spectrum (precursor m/z and fragmentVotes: 0GitHub stars: 16
- Mass Spectrometry M Z Accuracy AssessmentUse when when you have detected peaks in a direct injection FTICR-MSVotes: 0GitHub stars: 16
- Mass Spectrometry Mass Accuracy And Precision TuningUse when when extracting and validating chromatographic peaks for targetVotes: 0GitHub stars: 16
- Mass Spectrometry Match Factor FilteringUse when you have a GC-MS dataset with a Match.Factor column (outputVotes: 0GitHub stars: 16
- Mass Spectrometry Matrix Background SimulationUse when when you need to create negative control or background-onlyVotes: 0GitHub stars: 16
- Mass Spectrometry Metadata CachingUse when you plan to perform repeated queries or filtering on MS metadataVotes: 0GitHub stars: 16
- Mass Spectrometry Metadata ExtractionUse when you have peak/feature tables from one or more of MZmine, XCMS,Votes: 0GitHub stars: 16
- Mass Spectrometry Metadata InterpretationUse when when integrating LC-MS/MS data from diverse sources (e.g., publicVotes: 0GitHub stars: 16
- Mass Spectrometry Metadata ParsingUse when you have a Thermo Fisher Orbitrap .raw file and need to programmaticallyVotes: 0GitHub stars: 16
- Mass Spectrometry Metadata ValidationUse when after importing raw LC-MS/MS data files into the SIRIUS JavaVotes: 0GitHub stars: 16
- Mass Spectrometry Method Cycle VerificationUse when when you have a Thermo Fisher Scientific Orbitrap .raw fileVotes: 0GitHub stars: 16
- Mass Spectrometry Metric EngineeringUse when you have raw DIA mass spectrometry files (.raw, .d, .wiff formats)Votes: 0GitHub stars: 16
- Mass Spectrometry Molecular Formula Handling'Use when you have raw or processed FT-ICR MS spectra with detected peaksVotes: 0GitHub stars: 16
- Mass Spectrometry Network ConstructionUse when you have deconvolved GC-MS spectra (output from auto-deconvolution)Votes: 0GitHub stars: 16
- Mass Spectrometry Outlier DetectionUse when you have multi-sample MS1 data (LC-MS, LC-IMS-MS, or directVotes: 0GitHub stars: 16
- Mass Spectrometry Package IntegrationUse when you have R Spectra objects and need to apply Python-only MSVotes: 0GitHub stars: 16
- Mass Spectrometry Peak Alignment VisualizationUse when when you have aligned peak data from molecular networking (withVotes: 0GitHub stars: 16
- Mass Spectrometry Peak ClassificationUse when you have raw mzML files and feature tables (CSV format fromVotes: 0GitHub stars: 16
- Mass Spectrometry Peak Data LoadingUse when when you have raw or parsed MS spectra data (m/z values, intensityVotes: 0GitHub stars: 16
- Mass Spectrometry Peak Detection And AlignmentUse when after normalization, smoothing, and baseline reduction haveVotes: 0GitHub stars: 16
- Mass Spectrometry Peak Detection And ExtractionUse when you have raw high-resolution mass-spectrometry data in mzMLVotes: 0GitHub stars: 16
- Mass Spectrometry Peak EnumerationUse when you have preprocessed MSI data (peaks already binned and normalized)Votes: 0GitHub stars: 16
- Mass Spectrometry Peak Filtering And Noise ReductionUse when you have raw MS/MS spectra in MGF, mzML, or msp format and needVotes: 0GitHub stars: 16
- Mass Spectrometry Peak Identification And ExtractionUse when when you have raw mass spectrometry data from direct-infusionVotes: 0GitHub stars: 16
- Mass Spectrometry Peak Intensity EncodingUse when working with imaging mass spectrometry (IMS) datasets whereVotes: 0GitHub stars: 16
- Mass Spectrometry Peak Pair AnalysisUse when you have preprocessed MSI data (as a CSV intensity matrix orVotes: 0GitHub stars: 16
- Mass Spectrometry Peak ValidationUse when after peak alignment across all spectra in an MSImagingExperimentVotes: 0GitHub stars: 16
- Mass Spectrometry Plot Taxonomy ImplementationUse when you are building a visualization library that must support multipleVotes: 0GitHub stars: 16