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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Lipid A Structure AnnotationUse when when you have high-resolution tandem mass spectrometry (MS2)Votes: 0GitHub stars: 16
- Lipid Abundance Differential AnalysisUse when you have a preprocessed and normalized lipid abundance matrixVotes: 0GitHub stars: 16
- Lipid Adduct Pairing By Neutral MassUse when when processing mass spectrometry imaging data with multipleVotes: 0GitHub stars: 16
- Lipid Candidate MatchingUse when you have peak-picked MS/MS data (e.g., from MZmine, XCMS, MS-DIAL,Votes: 0GitHub stars: 16
- Lipid Category ClassificationUse when a spatial metabolomics dataset contains semicolon-delimitedVotes: 0GitHub stars: 16
- Lipid Chain Composition EnumerationUse when constructing a de novo or expanded lipid spectral library thatVotes: 0GitHub stars: 16
- Lipid Class Coverage AssessmentUse when when you have acquired a CCS reference library (such as DTCCSN2Votes: 0GitHub stars: 16
- Lipid Class EnumerationUse when you have a lipid identification or library-generation task thatVotes: 0GitHub stars: 16
- Lipid Class Stratified AnalysisUse when you have IM-MS lipidomics data with measured CCS values, samplesVotes: 0GitHub stars: 16
- Lipid Concentration NormalizationUse when your lipidomics experiment includes spiked internal lipid standardsVotes: 0GitHub stars: 16
- Lipid Coverage AssessmentUse when after hierarchical fragmentation library matching has producedVotes: 0GitHub stars: 16
- Lipid Database Query And AnnotationUse when you have parsed MRM transition data (m/z values, retention times,Votes: 0GitHub stars: 16
- Lipid Database QueryingUse when you have acquired full-scan mass spectrometry imaging data (e.g.,Votes: 0GitHub stars: 16
- Lipid Derivatization Chemistry ModelingUse when you have N-methyl-derivatized unsaturated sterol lipid structuresVotes: 0GitHub stars: 16
- Lipid Expression Pattern VisualizationUse when after statistical analysis of lipid abundance data has producedVotes: 0GitHub stars: 16
- Lipid Feature Annotation And SortingUse when after quantifying ion images in LipidQMap and before exportingVotes: 0GitHub stars: 16
- Lipid Feature Identifier MatchingUse when you have an isotope-corrected or raw MSI dataset stored in HDF5Votes: 0GitHub stars: 16
- Lipid Feature NormalizationUse when after raw lipidomic and metabolomic data files have been generatedVotes: 0GitHub stars: 16
- Lipid Fingerprint Regeneration Neural NetworksUse when you have MS/MS spectra with initial lipid annotations from spectralVotes: 0GitHub stars: 16
- Lipid Fragmentation Pattern ApplicationUse when you have an enumerated list of lipid species (identified byVotes: 0GitHub stars: 16
- Lipid Fragmentation Pattern PredictionUse when you have defined lipid species (class, chain composition, andVotes: 0GitHub stars: 16
- Lipid Fragmentation Pattern RecognitionUse when you have experimental tandem MS (MS/MS) spectra from lipid samplesVotes: 0GitHub stars: 16
- Lipid Identification Quality FilteringUse when you have MS-DIAL lipid identification results (alignment exportsVotes: 0GitHub stars: 16
- Lipid Identification ScoringUse when after peak picking (MZmine, XCMS, MS-DIAL, or Compound DiscovererVotes: 0GitHub stars: 16
- Lipid Identifier NormalizationUse when when you have a list of lipids identified by different databaseVotes: 0GitHub stars: 16
- Lipid Library Annotation From MzUse when you have experimental peaklist data (CSV or mzML-derived tables)Votes: 0GitHub stars: 16
- Lipid Library CurationUse when you have obtained MobiLipid or a similar IM-MS lipidomics packageVotes: 0GitHub stars: 16
- Lipid Library Format SchemaUse when you have identified lipid species unique to your experimentalVotes: 0GitHub stars: 16
- Lipid Library Format SpecificationUse when when you have curated or synthesized a set of custom lipid speciesVotes: 0GitHub stars: 16
- Lipid Maps Database LookupUse when when you have a parsed lipid species table (output from LipidSearchVotes: 0GitHub stars: 16
- Lipid Mass Spectral MatchingUse when you have peak-picked LC-HRMS/MS or direct infusion MS/MS dataVotes: 0GitHub stars: 16
- Lipid Metadata Annotation MappingUse when when exporting in-memory generated spectra as MSP-format spectralVotes: 0GitHub stars: 16
- Lipid Nomenclature MappingUse when you need to generate a comprehensive, non-redundant inventoryVotes: 0GitHub stars: 16
- Lipid Nomenclature ParsingUse when you have received raw lipid identification output from LipidSearchVotes: 0GitHub stars: 16
- Lipid Nomenclature SimplificationUse when you have spatial metabolomics data with semicolon-delimitedVotes: 0GitHub stars: 16
- Lipid Ontology Category MappingUse when you have a list of detected lipids (e.g., from LC-MS/MS lipidomicsVotes: 0GitHub stars: 16
- Lipid Retention Time Rule ApplicationUse when you have candidate lipid annotations from spectral library matchingVotes: 0GitHub stars: 16
- Lipid Species Abundance CountingUse when you have access to a lipidomics library repository (e.g., LipidMatchVotes: 0GitHub stars: 16
- Lipid Species Annotation AssessmentUse when after running MetaboAnnotatoR's annotateRC function when youVotes: 0GitHub stars: 16
- Lipid Species IdentificationUse when you have centroid-mode LC–MS AIF chromatograms processed byVotes: 0GitHub stars: 16
- Lipid Spectral Data ExportUse when after generating a complete lipid spectral library with adduct-specificVotes: 0GitHub stars: 16
- Lipid Structure SpecificationUse when you have identified lipid species unique to your sample typeVotes: 0GitHub stars: 16
- Lipid Type Category EnumerationUse when when you have downloaded or cloned a lipidomics library repositoryVotes: 0GitHub stars: 16
- Lipidomics Data MiningUse when when you have quantitative lipidomics data (either from SkylineVotes: 0GitHub stars: 16
- Lipidomics Experiment Object ConstructionUse when when you have lipidomics quantitation data (lipid abundancesVotes: 0GitHub stars: 16
- Local Maxima IdentificationUse when you have raw LC-HRMS profile-mode data and need to identifyVotes: 0GitHub stars: 16
- Locality Sensitive Hashing Index ConstructionUse when you have a large collection of mass spectrometry spectra (m/zVotes: 0GitHub stars: 16
- Log Transform Normalization For MetabolomicsUse when after chromatographic peak detection, fill-in of missing peaks,Votes: 0GitHub stars: 16
- Log Transformation ApplicationUse when apply log-transformation immediately after loading a raw metabolomicsVotes: 0GitHub stars: 16
- Log Transformation PreprocessingUse when apply log transformation when peak intensity distributions areVotes: 0GitHub stars: 16