All authors
Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Isotopic Peak Intensity DistributionUse when when you have one or more peptide sequences (as strings) andVotes: 0GitHub stars: 16
- Isotopic Peak RemovalUse when after loading raw FT-ICR MS peak lists with assigned molecularVotes: 0GitHub stars: 16
- Isotopic Signature Clustering And GroupingUse when you have a feature table (m/z, drift_time, retention_time, intensity)Votes: 0GitHub stars: 16
- Isotopic Signature Detection And FilteringUse when after DEIMoS isotope detection has assigned potential isotopicVotes: 0GitHub stars: 16
- Isotopic Signature Validation And FilteringUse when after isotope detection has enumerated C13 isotopologue patternsVotes: 0GitHub stars: 16
- Isotopologue Abundance Correction'Use when you have LC-MS data from isotope labeling experiments whereVotes: 0GitHub stars: 16
- Isotopologue Adduct Cluster AssignmentUse when after sample alignment and peak picking have produced an alignedVotes: 0GitHub stars: 16
- Isotopologue Adduct Cross Assay Link EncodingUse when after structural cluster assignment and correlation clusteringVotes: 0GitHub stars: 16
- Isotopologue Adduct Link IdentificationUse when you have selected statistically significant features from multi-assayVotes: 0GitHub stars: 16
- Isotopologue Distribution Matrix ConstructionUse when when you have measured fractional abundances of isotopologuesVotes: 0GitHub stars: 16
- Isotopologue Grouping By Mass AccuracyUse when after PuInc_seeker has identified putative incorporations inVotes: 0GitHub stars: 16
- Isotopologue Mass Delta CalculationUse when when constructing a reference mass-matching framework for untargetedVotes: 0GitHub stars: 16
- Isotopologue Mass Offset CalculationUse when you have a peak-picked feature table (HDF5 format with m/z,Votes: 0GitHub stars: 16
- Isotopologue Pattern Detection LcmsUse when after filtering LC-MS features by statistical significance (e.g.,Votes: 0GitHub stars: 16
- Isotopologue Quantification ExtractionUse when you have GC-CI-MS or LC-MS data in mzML format targeting a definedVotes: 0GitHub stars: 16
- Isotopologue Ratio Quality AssessmentUse when evaluating the reliability of non-targeted data pre-processingVotes: 0GitHub stars: 16
- Isotopologue Ratio Quality FilteringUse when when extracting isotopologue patterns from centroided mzML filesVotes: 0GitHub stars: 16
- Isotopologue Signature DetectionUse when you have preprocessed, statistically significant LC-MS featuresVotes: 0GitHub stars: 16
- Iterative Fitting ConvergenceUse when you have 1D mass spectrometry signal data (e.Votes: 0GitHub stars: 16
- Iterative Peak Selection From Latent SpaceUse when you have latent low-dimension peak features extracted by a Graph-attentionVotes: 0GitHub stars: 16
- J Coupling Multiplet GenerationUse when you have parsed metabolite identities with known spin-systemVotes: 0GitHub stars: 16
- Java Build Artifact ValidationUse when when you need to verify that a Java project's automated buildVotes: 0GitHub stars: 16
- Java Source Code InspectionUse when when you need to understand how a Java application routes inputVotes: 0GitHub stars: 16
- Jcamp File ParsingUse when you receive uploaded spectral data in JCAMP format (jcamp) asVotes: 0GitHub stars: 16
- Jms Compliant Database QueryingUse when you have grouped LC-MS features into empirical compounds withVotes: 0GitHub stars: 16
- Joint Embedding Space ScoringUse when you have a mass spectrum from an untargeted metabolomics experimentVotes: 0GitHub stars: 16
- Jpa Module Execution And ConfigurationUse when when you have raw LC-MS data in mzXML format (or vendor formatsVotes: 0GitHub stars: 16
- Json Document EnrichmentUse when when your project JSON document contains public identifiersVotes: 0GitHub stars: 16
- Json File Parsing And LoadingUse when after generating a structured JSON result file from a priorVotes: 0GitHub stars: 16
- Json Format ConversionUse when when you have extracted file metadata or scan summaries as RVotes: 0GitHub stars: 16
- Json Parsing Motifset ExtractionUse when you have completed the MS2LDA LDA modeling phase and possessVotes: 0GitHub stars: 16
- Json Payload Construction For Nmr SpectraUse when when you have NMR peak assignments (1H and 13C chemical shiftVotes: 0GitHub stars: 16
- Json Record EnrichmentUse when when a project JSON record contains a resolvable public identifierVotes: 0GitHub stars: 16
- Json Response SerializationUse when when a backend service receives structured prediction resultsVotes: 0GitHub stars: 16
- Json Schema Validation For DashboardUse when after running the msfeast_pipeline notebook to generate dashboard_data.jsonVotes: 0GitHub stars: 16
- Json Schema ValidationUse when you have loaded an mwTab file into a structured MWTabFile objectVotes: 0GitHub stars: 16
- Json Serialization And DeserializationUse when after extracting header metadata from a Thermo Fisher ScientificVotes: 0GitHub stars: 16
- Json Serialization DeserializationUse when when you have completed a computational step (e.g., corpus featureVotes: 0GitHub stars: 16
- Json Serialization Of Metabolomics DataUse when after pre-annotation grouping (e.g., via khipu) has assignedVotes: 0GitHub stars: 16
- Json Serialization Of Query StructuresUse when you have parsed a MassQL query string into an AST representationVotes: 0GitHub stars: 16
- Json Spectral Data ProcessingUse when you have raw or semi-curated mass spectrometry spectral dataVotes: 0GitHub stars: 16
- Json Spectral Format ParsingUse when when you have raw mass spectrometry spectral data in JSON formatVotes: 0GitHub stars: 16
- Json Structure Validation For Metabolomics DataUse when after serializing empirical compound collections to JSON formatVotes: 0GitHub stars: 16
- Jupyter Notebook Development PythonUse when when building reproducible Python-based computational workflowsVotes: 0GitHub stars: 16
- Jupyter Notebook ExecutionUse when when you have three coordinated mass spectrometry data tablesVotes: 0GitHub stars: 16
- Jupyter Notebook Workflow AutomationUse when when you have raw LC-MS/MS spectral data in .Votes: 0GitHub stars: 16
- Jupyter Notebook Workflow ExecutionUse when you have a curated training dataset of molecular structuresVotes: 0GitHub stars: 16
- K Fold Cross Validation Model SelectionUse when when fitting a multi-block PLS discriminant model on multi-assayVotes: 0GitHub stars: 16
- Kegg Candidate Network IntegrationUse when after cluster-based filtering has produced a set of candidateVotes: 0GitHub stars: 16
- Kegg Identifier To Mass MappingUse when you have raw LC-MS peak intensity data with mass-to-charge ratiosVotes: 0GitHub stars: 16