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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Inchikey Structural Similarity ComputationUse when you have a ranked list of library candidates (top 2000 by MS2Deepscore)Votes: 0GitHub stars: 16
- Inchikey Structural Similarity ScoringUse when you have candidate library matches from MS2Deepscore rankingVotes: 0GitHub stars: 16
- Indexed Gzip File ParsingUse when you have compressed mzML.gz files and need to retrieve specificVotes: 0GitHub stars: 16
- Inference Model Cpu Thread ConfigurationUse when when running Mass2SMILES inference on a TensorFlow-CPU buildVotes: 0GitHub stars: 16
- Inference Performance BenchmarkingUse when you have trained two or more graph neural network models onVotes: 0GitHub stars: 16
- Infoence Loss CompositionUse when when training embeddings from MS/MS spectra data where you needVotes: 0GitHub stars: 16
- Injection Order Assignment And SchedulingUse when designing multi-batch LC/GC-MS experiments where you need toVotes: 0GitHub stars: 16
- Injection Order Direction SpecificationUse when when configuring a multi-well plate design (96-well, 384-well,Votes: 0GitHub stars: 16
- Input Output Kernel Regression For Metabolite MatchingUse when apply IOKR when you have BGCs with structural predictions basedVotes: 0GitHub stars: 16
- Input Type ClassificationUse when a web application receives mass spectrometry data through heterogeneousVotes: 0GitHub stars: 16
- Installation Requirement ValidationUse when before attempting to run QCxMS2 for the first time, after updatingVotes: 0GitHub stars: 16
- Installation TroubleshootingUse when when setting up matchms for the first time in a new environment,Votes: 0GitHub stars: 16
- Installation Verification And ValidationUse when after cloning the ENPKG repository and installing dependenciesVotes: 0GitHub stars: 16
- Instrument Agnostic Feature EngineeringUse when you have DIA raw mass spectrometry files from multiple instrumentVotes: 0GitHub stars: 16
- Instrument Metadata ClassificationUse when when preprocessing a heterogeneous spectral library (e.g., GNPSVotes: 0GitHub stars: 16
- Instrument Metadata ParsingUse when when you have raw or semi-processed mass spectrometry data filesVotes: 0GitHub stars: 16
- Instrument Platform Compatibility MappingUse when when adopting a mass spectrometry data processing tool (e.g.,Votes: 0GitHub stars: 16
- Instrument Type Filtering GnpsUse when you have a large, mixed-instrument GNPS spectral dataset andVotes: 0GitHub stars: 16
- Instrumental Drift DetectionUse when you have a time-series of repeated QCpool (pooled quality control)Votes: 0GitHub stars: 16
- Instrumental Parameter Validation Mass SpectrometryUse when when you have obtained a raw Orbitrap mass spectrometry fileVotes: 0GitHub stars: 16
- Integration Test DevelopmentUse when when you have implemented or modified a data ingestion moduleVotes: 0GitHub stars: 16
- Integrative Omics Pathway EnrichmentUse when you have a preprocessed peak table with statistically significantVotes: 0GitHub stars: 16
- Intensity Color RepresentationUse when when visualizing 2D peak maps (x=m/z, y=retention time or ionVotes: 0GitHub stars: 16
- Intensity Dependent Missing Value SimulationUse when augmenting mass spectrometry ion images in ISO mode (isotopeVotes: 0GitHub stars: 16
- Intensity Distribution SimulationUse when when you need to create synthetic noisy MS/MS spectra from cleanVotes: 0GitHub stars: 16
- Intensity Drift Artifact DetectionUse when processing raw MS intensity tables from long measurement sequencesVotes: 0GitHub stars: 16
- Intensity Frequency AnalysisUse when you have an MS/MS peak list and need to remove electronic noise—specificallyVotes: 0GitHub stars: 16
- Intensity Normalization And ScalingUse when when working with raw or filtered MsmsSpectrum objects whereVotes: 0GitHub stars: 16
- Intensity Normalization SpectraUse when after noise reduction when working with imported imzML MSI dataVotes: 0GitHub stars: 16
- Intensity Threshold EvaluationUse when you have processed LC-MS data (mzML or vendor format) and needVotes: 0GitHub stars: 16
- Intensity Threshold Filtering Ms DataUse when when you have loaded aligned peak data (from a preceding molecularVotes: 0GitHub stars: 16
- Intensity Threshold Noise FilteringUse when you have loaded a raw or partially processed MsmsSpectrum objectVotes: 0GitHub stars: 16
- Intensity To Absolute Concentration ConversionUse when your lipidomics experiment includes spiked internal lipid standardsVotes: 0GitHub stars: 16
- Intensity To Concentration ConversionUse when you have raw mass spectrometry intensity measurements from sampleVotes: 0GitHub stars: 16
- Intensity Value Aggregation Across ReplicatesUse when after peak recognition has identified features (m/z and retentionVotes: 0GitHub stars: 16
- Intensity Vector Manipulation NumpyUse when you have extracted mass tracks (EICs) from multiple LC-MS samplesVotes: 0GitHub stars: 16
- Inter Sample Variance CalculationUse when after applying batch correction (e.g., via pycombat) to a multi-batchVotes: 0GitHub stars: 16
- Inter Scan Interval ValidationUse when after acquiring a PRM experiment on a Thermo Fisher OrbitrapVotes: 0GitHub stars: 16
- Interactive Application Accessibility TestingUse when after instantiating a specXplore dashboard session layer withVotes: 0GitHub stars: 16
- Interactive Data Exploration DesignUse when you have NMR metabolomics measurements paired with pre-analyticalVotes: 0GitHub stars: 16
- Interactive Filter Control Design WebUse when when you have a web-based visualization of aligned mass spectrometryVotes: 0GitHub stars: 16
- Interactive Html Figure Generation PlotlyUse when your mass spectrometry DataFrame contains m/z, retention timeVotes: 0GitHub stars: 16
- Interactive Mass Spectrometry Plot Generation And AnnotationUse when when you have extracted ion chromatograms (XICs), ion mobilogramsVotes: 0GitHub stars: 16
- Interactive Network Visualization RenderingUse when after structural clustering (isotopologue grouping, adduct detection,Votes: 0GitHub stars: 16
- Interactive Plot Axis Selection UiUse when when you have a high-resolution mass spectrometry dataset withVotes: 0GitHub stars: 16
- Interactive Plot Backend EvaluationUse when you have mass spectrometry data (chromatograms, spectra, peakVotes: 0GitHub stars: 16
- Interactive Plot Construction Mass SpecUse when after LC-MS data has been converted to mzML format and processedVotes: 0GitHub stars: 16
- Interactive Plot Customization BokehUse when when you have loaded extracted ion chromatogram traces (viaVotes: 0GitHub stars: 16
- Interactive Plot EmbeddingUse when you have resolved USI (Unified Spectrum Identifier) spectrumVotes: 0GitHub stars: 16
- Interactive Plot GenerationUse when you have loaded m/z and intensity arrays from an MZA file (viaVotes: 0GitHub stars: 16