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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Interactive Plot Rendering BokehUse when when you have mass spectrometry data in a Pandas DataFrame withVotes: 0GitHub stars: 16
- Interactive Spectral Visualization EmperorUse when when you have computed PCA coordinates from chemical annotationVotes: 0GitHub stars: 16
- Interactive Visualization InspectionUse when after msFeaST pipeline execution has produced a dashboard_data.jsonVotes: 0GitHub stars: 16
- Interactive Workflow Validation'Use when after automated peak detection has identified candidate peaksVotes: 0GitHub stars: 16
- Interference Profile IdentificationUse when after running saturation repair or multidimensional smoothingVotes: 0GitHub stars: 16
- Internal Standard Area Mis Injection FlaggingUse when after building a SummarizedExperiment object containing LC-MSVotes: 0GitHub stars: 16
- Internal Standard Feature ExtractionUse when you have processed LC-MS run data (feature table or peak detectionVotes: 0GitHub stars: 16
- Internal Standard Intensity CalibrationUse when you have added a known internal standard compound to your nano-DESIVotes: 0GitHub stars: 16
- Internal Standard Ion Selection And ApplicationUse when after isotope correction has been applied to MSI ion images,Votes: 0GitHub stars: 16
- Internal Standard Peak Detection And ValidationUse when you have loaded processed LC-MS data (mzML or vendor format)Votes: 0GitHub stars: 16
- Internal Standardization Correction LipidomesUse when you have IM-MS lipidomics data from samples spiked with U13C-labeledVotes: 0GitHub stars: 16
- Internal Standardization Lipid MappingUse when you have (LC-)IM-MS lipidomics data from samples spiked withVotes: 0GitHub stars: 16
- Internal Standardization With Isotope LabelsUse when your IM-MS lipidomics samples have been spiked with fully labeledVotes: 0GitHub stars: 16
- Interoperability TestingUse when when a new file format specification exists as a living documentVotes: 0GitHub stars: 16
- Interpretable Machine LearningUse when when you have tandem mass spectra data and need to predict aVotes: 0GitHub stars: 16
- Interquartile Range Filtering For Outlier RejectionUse when when you have ensemble predictions (e.g., from Monte-Carlo DropoutVotes: 0GitHub stars: 16
- Iokr Fingerprint Space RankingUse when when you have paired MS2 spectra and BGCs with structural candidatesVotes: 0GitHub stars: 16
- Iokr Kernel Regression ScoringUse when when you have paired genomics (antiSMASH-detected BGCs withVotes: 0GitHub stars: 16
- Ion Adduct Isotope Pattern MatchingUse when you have a preprocessed feature table (m/z, retention time,Votes: 0GitHub stars: 16
- Ion Chromatogram Mobilogram Visualization And InterpretationUse when after loading raw diaPASEF or DIA mass spectrometry data (mzMLVotes: 0GitHub stars: 16
- Ion Clustering By Retention Time And MassUse when your peak table contains suspected mispicked ions—ions withVotes: 0GitHub stars: 16
- Ion Count Percentage CalculationUse when after applying one or more mpactr filters (mispicked, group,Votes: 0GitHub stars: 16
- Ion Current Calculation And AggregationUse when when raw LC-MS feature tables exhibit inter-sample intensityVotes: 0GitHub stars: 16
- Ion Feature ExtractionUse when you have raw mass-spectrometry data files (mzML, mzXML, or vendorVotes: 0GitHub stars: 16
- Ion Filter Status CategorizationUse when after applying one or more mpactr filters (filter_mispicked_ions,Votes: 0GitHub stars: 16
- Ion Formula Matrix ClassificationUse when you have peak data from MSI experiments (stored as .zip peakVotes: 0GitHub stars: 16
- Ion Image Augmentation Contrastive LearningUse when when you have preprocessed mass spectrometry ion images (single-channelVotes: 0GitHub stars: 16
- Ion Image Augmentation DesignUse when when preparing ion image data from mass spectrometry imagingVotes: 0GitHub stars: 16
- Ion Image Augmentation Intensity DependentUse when training a contrastive encoder on mass spectrometry imagingVotes: 0GitHub stars: 16
- Ion Image Embedding OptimizationUse when you have 512-dimensional representation vectors output fromVotes: 0GitHub stars: 16
- Ion Image Quantification WorkflowUse when when you have imzML mass spectrometry imaging data files andVotes: 0GitHub stars: 16
- Ion Mobility Arrival Time ConversionUse when you have a feature table containing raw ion mobility arrivalVotes: 0GitHub stars: 16
- Ion Mobility Calibration Curve FittingUse when you have TWIM-MS experimental data with arrival times and m/zVotes: 0GitHub stars: 16
- Ion Mobility Calibration ValidationUse when when you have positive- or negative-mode ion mobility spectrometryVotes: 0GitHub stars: 16
- Ion Mobility Class StratificationUse when you have TWIM-MS experimental data with assigned biomolecularVotes: 0GitHub stars: 16
- Ion Mobility Demultiplexing AlgorithmUse when you have raw IM-MS data in UIMF or Agilent MassHunter .d formatVotes: 0GitHub stars: 16
- Ion Mobility Dimension DetectionUse when when processing raw mass spectrometry data files of unknownVotes: 0GitHub stars: 16
- Ion Mobility Dimension InterpolationUse when when processing raw IM-MS data (Agilent MassHunter .Votes: 0GitHub stars: 16
- Ion Mobility Feature ClassificationUse when you have high-dimensional TWIM-MS data (arrival time and m/zVotes: 0GitHub stars: 16
- Ion Mobility Feature EngineeringUse when you have a set of metabolite structures (or their molecularVotes: 0GitHub stars: 16
- Ion Mobility Filtering And Tolerance TuningUse when your raw MSI dataset is acquired on an ion-mobility-enabledVotes: 0GitHub stars: 16
- Ion Mobility Heatmap VisualizationUse when you have raw LC-IMS-MS data (Agilent, Thermo, Bruker, or mzMLVotes: 0GitHub stars: 16
- Ion Mobility Machine Learning TrainingUse when you have a curated dataset of molecular structures (or molecularVotes: 0GitHub stars: 16
- Ion Mobility Mass Spectrometry Data PreprocessingUse when when you have raw IM-MS data from drift tube (DT) or SLIM instrumentsVotes: 0GitHub stars: 16
- Ion Mobility Mass Spectrometry Data ProcessingUse when you have IM-MS lipidomics samples spiked with U13C-labeled internalVotes: 0GitHub stars: 16
- Ion Mobility Mobilogram VisualizationUse when when you have mass spectrometry data with ion mobility (driftVotes: 0GitHub stars: 16
- Ion Mobility Peak PickingUse when when you have extracted ion mobilograms from DIA-MS experimentsVotes: 0GitHub stars: 16
- Ion Mobility Reference MatchingUse when you have raw arrival-time data from TWIM-MS and need to convertVotes: 0GitHub stars: 16
- Ion Mobility Saturation Detection And RepairUse when preprocessing raw Agilent MassHunter (.d) or UIMF IM-MS dataVotes: 0GitHub stars: 16
- Ion Mobility Spectrometry Data InterpretationUse when you have raw ion mobility-mass spectrometry data (drift timeVotes: 0GitHub stars: 16