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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Group Wise Chemical Enrichment CalculationUse when when comparing GNPS chemical annotations across two or moreVotes: 0GitHub stars: 16
- Gzip Index Structure ParsingUse when when you have an indexed gzip-compressed mzML file (mzML.gzVotes: 0GitHub stars: 16
- Harmonized Metadata Schema MappingUse when you have imported mass spectrometry spectra from multiple fileVotes: 0GitHub stars: 16
- Hash Based Deduplication WorkflowUse when when processing open mass spectrometry library (OMSL) data thatVotes: 0GitHub stars: 16
- Hash Function ParameterizationUse when when you have normalized or vectorized mass spectrometry spectralVotes: 0GitHub stars: 16
- Hdf5 Cardinal Format PreservationUse when after performing isotopic correction, quantitation, or otherVotes: 0GitHub stars: 16
- Hdf5 Feature Table LoadingUse when you have mass spectrometry feature data stored in HDF5 formatVotes: 0GitHub stars: 16
- Hdf5 File Format Reading And Writing'Use when you have isotope-corrected or raw ion-image intensity matricesVotes: 0GitHub stars: 16
- Hdf5 File Io OperationsUse when you have raw or peak-picked mass spectrometry data in HDF5 formatVotes: 0GitHub stars: 16
- Hdf5 File Structure SpecificationUse when when exporting quantified MSI data (feature-by-pixel intensityVotes: 0GitHub stars: 16
- Hdf5 File Structure TraversalUse when when you have converted multidimensional mass spectrometry dataVotes: 0GitHub stars: 16
- Hdf5 Hierarchical Data AccessUse when you have multidimensional MS data converted to MZA HDF5 formatVotes: 0GitHub stars: 16
- Hdf5 Output Validation VerificationUse when after invoking the DEIMoS CLI with a configuration file andVotes: 0GitHub stars: 16
- Hdf5 Schema ValidationUse when after converting proprietary vendor mass spectrometry filesVotes: 0GitHub stars: 16
- Heatmap Visualization Design'Use when after training a DeepMSProfiler model and generating per-sampleVotes: 0GitHub stars: 16
- Heavy Isotope Labeling InterpretationUse when your peptide sample has been enriched with stable isotope labelsVotes: 0GitHub stars: 16
- Heterogeneous Graph Embedding DesignUse when when building a Graph Transformer model for continuous propertyVotes: 0GitHub stars: 16
- Heteronuclear Homonuclear Correlation ExtractionUse when you have 2D NMR spectral data from multiple samples (a largeVotes: 0GitHub stars: 16
- Hierarchical Clustering Dendrogram CuttingUse when after XCMS feature detection, grouping, retention time correction,Votes: 0GitHub stars: 16
- Hierarchical Clustering Dendrogram InterpretationUse when you have a pre-computed hierarchical dendrogram from correlation-basedVotes: 0GitHub stars: 16
- Hierarchical Clustering Parameter OptimizationUse when after peak detection in GC-IMS preprocessing, when you needVotes: 0GitHub stars: 16
- Hierarchical Database IndexingUse when when you have a large combinatorial chemical space (e.g., allVotes: 0GitHub stars: 16
- Hierarchical Dataset Metadata ExtractionUse when when you have received an MZA-format HDF5 file (or other hierarchicalVotes: 0GitHub stars: 16
- Hierarchical Library Data Structure DesignUse when when building a reference library for high-throughput spectralVotes: 0GitHub stars: 16
- Hierarchical Spectrum Object ConstructionUse when immediately after parsing and validating raw LC-MS/MS data filesVotes: 0GitHub stars: 16
- High Dimensional Data IndexingUse when when you have millions of high-dimensional objects (e.g., MS/MSVotes: 0GitHub stars: 16
- High Dimensional Signal EnhancementUse when when you have raw or preprocessed mass spectrometry imagingVotes: 0GitHub stars: 16
- High Dimensional Similarity Search OptimizationUse when when you have a large spectral library (thousands to millionsVotes: 0GitHub stars: 16
- High Performance Metric ComputationUse when you have implemented or are evaluating an algorithmic or systemVotes: 0GitHub stars: 16
- High Quality Spectral Library BenchmarkingUse when you have a pre-trained MS/MS spectral embedding model and needVotes: 0GitHub stars: 16
- High Resolution Mass Spectral Data ProcessingUse when you have high-resolution mass-spectrometry data (Orbitrap, GC-CI-MS)Votes: 0GitHub stars: 16
- High Resolution Mass Spectrometry Data PreprocessingUse when you have acquired high-resolution MS/MS spectra in mzML, mzXML,Votes: 0GitHub stars: 16
- High Resolution Mass Spectrometry Data ProcessingUse when you have uploaded a delimited data file (CSV, TSV, or semicolon-separated)Votes: 0GitHub stars: 16
- High Resolution Mass Spectrometry InterpretationUse when you have centroided LC- or GC-HRMS data (in mzML format, ideallyVotes: 0GitHub stars: 16
- High Resolution Mass Spectrum ProcessingUse when when you have high-resolution tandem mass spectra from proteomicsVotes: 0GitHub stars: 16
- High Resolution Ms2 Peak AssignmentUse when you have high-resolution MS2 data in .ms2 format from lipidVotes: 0GitHub stars: 16
- High Resolution Spot To Spot Integration'Use when you have two spatial omics datasets (e.g., spatial transcriptomeVotes: 0GitHub stars: 16
- High Throughput Spectral Data ProcessingUse when when you have MGF-formatted mass spectrometry peak files (typicallyVotes: 0GitHub stars: 16
- Histogram Bin Width ConfigurationUse when you have uploaded a numeric column (e.g., H/C ratio, O/C ratio,Votes: 0GitHub stars: 16
- Histogram Peak Occurrence AnalysisUse when after you have computed a histogram of pairwise mass differencesVotes: 0GitHub stars: 16
- Hit Metric Evaluation Fold AveragingUse when when you have a trained MS/MS spectral embedding model and needVotes: 0GitHub stars: 16
- Hit Score Consolidation Across DomainsUse when you have executed batch spectral searches against two or moreVotes: 0GitHub stars: 16
- Hmdb Compound Database ManipulationUse when when you need to establish a reproducible inventory of compoundsVotes: 0GitHub stars: 16
- Hmdb Formula SamplingUse when when you need to create in silico LC-MS/MS experiments withVotes: 0GitHub stars: 16
- Hmdb Metabolite ExtractionUse when you have downloaded raw HMDB data (hmdb_metabolites.zip or pickleVotes: 0GitHub stars: 16
- Hmdb Metabolite Query And RetrievalUse when you have identified one or more proton NMR spectral regions-of-interestVotes: 0GitHub stars: 16
- Hnsw Graph Construction And OptimizationUse when when you have pre-computed Word2vec spectrum embeddings andVotes: 0GitHub stars: 16
- Homologous Series ClusteringUse when you have a feature list (m/z, retention time, intensity) fromVotes: 0GitHub stars: 16
- Hotelling T Squared Outlier DetectionUse when after data normalization (Step 7) on the preprocessed featureVotes: 0GitHub stars: 16
- Hpc Job ParallelizationUse when you have a filtered set of conformers (100s–1000s) from ASE-ANIVotes: 0GitHub stars: 16