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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Formula Ranking Accuracy EvaluationUse when use this skill after training or fine-tuning a chemical formulaVotes: 0GitHub stars: 16
- Formula Sampler ConfigurationUse when you need to generate a set of candidate chemical formulas forVotes: 0GitHub stars: 16
- Formula Stratified Sampling'Use when when preparing MS/MS spectral training data where: (1) theVotes: 0GitHub stars: 16
- Formula Transformer Architecture ApplicationUse when you have tandem mass spectra (MS/MS) with unknown precursorVotes: 0GitHub stars: 16
- Fractional Abundance TransformationUse when you have raw LC-MS fractional abundances of isotopologues (FAM)Votes: 0GitHub stars: 16
- Fragment Assembly Transformer ArchitectureUse when when you have 1D NMR spectra (1H and/or 13C) of an unknown compoundVotes: 0GitHub stars: 16
- Fragment Frequency Threshold OptimizationUse when you have replicate MS/MS spectra with labeled fragment recurrenceVotes: 0GitHub stars: 16
- Fragment Intensity AggregationUse when after extracting raw MS/MS spectra from mzML files but beforeVotes: 0GitHub stars: 16
- Fragment Ion Database MatchingUse when you have centroid-mode LC-MS AIF chromatograms processed throughVotes: 0GitHub stars: 16
- Fragment Ion Difference CountingUse when when preparing tandem MS/MS data for spectral alignment andVotes: 0GitHub stars: 16
- Fragment Ion Library MatchingUse when you have peak-picked experimental MS/MS data (m/z, retentionVotes: 0GitHub stars: 16
- Fragment Ion Mass CalibrationUse when when comparing experimental spectra to reference library spectraVotes: 0GitHub stars: 16
- Fragment Ion Mass Matching With Tolerance'Use when denoising MS/MS spectra and you have: (1) a precursor ion withVotes: 0GitHub stars: 16
- Fragment Ion Mass MatchingUse when you have a tandem mass spectrum (MSMS) of a known or hypothesizedVotes: 0GitHub stars: 16
- Fragment Ion Peak AnnotationUse when you have experimental MS/MS spectra matched against a referenceVotes: 0GitHub stars: 16
- Fragment Ion Peak Detection And NormalizationUse when immediately after loading raw MS/MS spectra from .mgf, .msp,Votes: 0GitHub stars: 16
- Fragment Ion Scoring And RankingUse when when you have an experimental MS/MS spectrum (centroid mode)Votes: 0GitHub stars: 16
- Fragment Ion Spectral MatchingUse when after pointwise correlation analysis and exact mass differenceVotes: 0GitHub stars: 16
- Fragment Ion Theoretical Mass CalculationUse when when building a comprehensive lipid fragment ion library coveringVotes: 0GitHub stars: 16
- Fragment Ion Type InterpretationUse when you have an tandem MS spectrum with unidentified peaks and aVotes: 0GitHub stars: 16
- Fragment Level Spectrum PredictionUse when when you have a molecular structure (SMILES, InChI, or chemicalVotes: 0GitHub stars: 16
- Fragment Mass Tolerance Calibration'Use when when implementing fragment ion annotation in proteomics workflowsVotes: 0GitHub stars: 16
- Fragment Match Rate ComputationUse when after denoising MS/MS spectra at multiple frequency thresholdsVotes: 0GitHub stars: 16
- Fragment Neutral Loss Annotation MatchingUse when after generateComponents with algorithm='tp' has tentativelyVotes: 0GitHub stars: 16
- Fragment Peak Chemical AnnotationUse when you have MS/MS spectra with assigned precursor formulas andVotes: 0GitHub stars: 16
- Fragment Peak Subformula EnumerationUse when you have a list of fragment peak m/z values and intensitiesVotes: 0GitHub stars: 16
- Fragment Recurrence Frequency CalculationUse when after extracting and grouping fragments from top x% TIC-filteredVotes: 0GitHub stars: 16
- Fragment To Structure AssemblyUse when when you have spectroscopic measurements (1D ¹H or ¹³C NMR)Votes: 0GitHub stars: 16
- Fragmentation Database ConstructionUse when when you have completed ORCA single-point energy calculationsVotes: 0GitHub stars: 16
- Fragmentation Motif LearningUse when you have preprocessed mass spectrometry fragmentation data (neutralVotes: 0GitHub stars: 16
- Fragmentation Pattern Annotation MagmaUse when you have a tandem MS/MS spectrum of a structurally modifiedVotes: 0GitHub stars: 16
- Fragmentation Pattern AnnotationUse when when you have an experimental MS/MS spectrum (query spectrumVotes: 0GitHub stars: 16
- Fragmentation Pattern ClassificationUse when you have tandem mass spectra for compounds with known binaryVotes: 0GitHub stars: 16
- Fragmentation Pattern Extraction And RankingUse when you have a collection of MS/MS spectra (≥2 spectra) and wishVotes: 0GitHub stars: 16
- Fragmentation Pattern Query ValidationUse when after converting a decision tree path into a MassQL query string,Votes: 0GitHub stars: 16
- Fragmentation Pattern Similarity ScoringUse when after feature detection and alignment have produced a featureVotes: 0GitHub stars: 16
- Fragmentation Pattern Spectral MatchingUse when when you have detected m/z values from LC-IM-MS/MS that matchVotes: 0GitHub stars: 16
- Fragmentation Spectrum ExtractionUse when you have raw or peak-detected mass spectrometry data (mzXML,Votes: 0GitHub stars: 16
- Fragmentation Spectrum Ion Pairing'Use when you have two MS/MS spectra (precursor m/z and fragment ionVotes: 0GitHub stars: 16
- Fragmentation Strategy Comparison Across DatasetsUse when you have extracted a chemical mixture from a real mzML acquisitionVotes: 0GitHub stars: 16
- Frame Metadata Extraction And ExportUse when after completing multidimensional smoothing and saturation repairVotes: 0GitHub stars: 16
- Ft Icr Ms Analysis Tool EvaluationUse when you are evaluating or selecting FT-ICR MS software for a specificVotes: 0GitHub stars: 16
- Ft Icr Ms Data Preprocessing And Quality ControlUse when when you have raw or processed FT-ICR MS peak-abundance .Votes: 0GitHub stars: 16
- Ft Icr Ms Data Processing Pipeline ExecutionUse when you have FT-ICR MS peak abundance data in Formularity .Votes: 0GitHub stars: 16
- Ft Icr Spectrum Recalibration Validation'Use when after applying mass calibration functions (LedFord, linear,Votes: 0GitHub stars: 16
- Fticr Mass Calibration EdgeshiftUse when you have FTICR-MS direct injection (mzML) data with identifiedVotes: 0GitHub stars: 16
- Ftms Mass Calibration WorkflowUse when when you have a processed Bruker Solarix FT-ICR mass spectrumVotes: 0GitHub stars: 16
- Ftms Mass Spectrum Peak DetectionUse when you have loaded an FT-ICR raw spectrum (e.g., ESI_NEG_SRFA.dVotes: 0GitHub stars: 16
- Ftms Raw Data Loading And ParsingUse when you have received raw FT-ICR transient data from Bruker SolarixVotes: 0GitHub stars: 16
- Ftms Transient Data LoadingUse when you have a Bruker Solarix FT-ICR transient file in .d formatVotes: 0GitHub stars: 16