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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Fiams Spectra Window Extraction And MergingUse when you have raw FIA-MS full-scan data in mzML format and need toVotes: 0GitHub stars: 16
- Fid To Frequency Domain Fourier TransformationUse when after simulating and convolving individual metabolite multipletsVotes: 0GitHub stars: 16
- File Api Endpoint ImplementationUse when when you need to construct a POST endpoint that ingests rawVotes: 0GitHub stars: 16
- File Format Compliance ValidationUse when you have generated or received mzPeak files from a Rust, Python,Votes: 0GitHub stars: 16
- File Format Conversion Peak Picking To LipidmatchUse when you have generated a peak table or feature list from MZmine,Votes: 0GitHub stars: 16
- File Format Conversion TroubleshootingUse when when integrating MSConvert into an automated LC-MS QC workflowVotes: 0GitHub stars: 16
- File Format Conversion ValidationUse when when you have raw mzML or mzXML mass spectrometry data filesVotes: 0GitHub stars: 16
- File Format Detection And RoutingUse when when you receive a mass spectrometry imaging dataset in unknownVotes: 0GitHub stars: 16
- File Format Detection By ExtensionUse when when building a file I/O abstraction layer that must supportVotes: 0GitHub stars: 16
- File Format Dispatch And Handler RoutingUse when you have a parser library that must support multiple file formatsVotes: 0GitHub stars: 16
- File Format Export And ValidationUse when after executing MassQL queries on mass spectrometry data thatVotes: 0GitHub stars: 16
- File Format Identification Mass SpectrometryUse when you have raw MS data files from one or more instrument vendorsVotes: 0GitHub stars: 16
- File Format Parsing And ValidationUse when you have peak/feature tables from one or more of MZmine, XCMS,Votes: 0GitHub stars: 16
- File Format Robustness TestingUse when when processing MS spectral data from multiple open mass spectraVotes: 0GitHub stars: 16
- File Format Validation ProteomicsUse when when raw MS files are uploaded to MSConnect via the Raw FileVotes: 0GitHub stars: 16
- File Format ValidationUse when after writing parsed spectra to a new MSP file using mssearchr'sVotes: 0GitHub stars: 16
- File Format Writing MzmlUse when after completing an Environment simulation or replay with scan-levelVotes: 0GitHub stars: 16
- File Grouping By Sample AttributesUse when you have a validated ReDU sample-information metadata tableVotes: 0GitHub stars: 16
- File Handler Instantiation And LifecycleUse when you need to open an mzML file in pymzML and must automaticallyVotes: 0GitHub stars: 16
- File Handler Interface IntegrationUse when you have mass spectrometry data stored in a non-standard formatVotes: 0GitHub stars: 16
- File I O AutomationUse when you have MZmine-exported LC-MS/MS data (MGF spectra and CSVVotes: 0GitHub stars: 16
- File Integrity ValidationUse when you have a raw NV (NMRViewJ) binary file and need to confirmVotes: 0GitHub stars: 16
- File Interface Integration And ExtensionUse when when you need to parse mzML data stored in a format beyond theVotes: 0GitHub stars: 16
- File Io Error Handling RobustnessUse when when designing or integrating a file parser for mass spectrometryVotes: 0GitHub stars: 16
- File Path Normalization And ValidationUse when when preparing to read Thermo Fisher Scientific .raw files usingVotes: 0GitHub stars: 16
- File Path Resolution And ValidationUse when when initializing a SmartPeak session from a sequence file,Votes: 0GitHub stars: 16
- File System Audit And ValidationUse when after invoking the saveAnnotations function on a MetaboAnnotatoRVotes: 0GitHub stars: 16
- Filter Criteria Composition And ValidationUse when you are preparing to reuse public tandem MS data from MassIVEVotes: 0GitHub stars: 16
- Filter Outcome Aggregation And CountingUse when after applying one or more mpactr filters (mispicked, group,Votes: 0GitHub stars: 16
- Filter Output InterpretationUse when after applying a filter function (filter_mispicked_ions(), filter_group(),Votes: 0GitHub stars: 16
- Filter Status Data Structure InterpretationUse when after applying a sequence of mpactr filters (filter_mispicked_ions,Votes: 0GitHub stars: 16
- Fixed Architecture Layer ValidationUse when after loading a specXplore session data object file from theVotes: 0GitHub stars: 16
- Fixed Size Integration MethodUse when you have aligned and baseline-corrected GC-IMS data with detectedVotes: 0GitHub stars: 16
- Floating Point Numerical Accuracy Assessment'Use when when implementing or validating a lossy numeric codec for mass-spectrometryVotes: 0GitHub stars: 16
- Flux Propensity Dataset IntegrationUse when when you have (1) LC-MS normalized intracellular metaboliteVotes: 0GitHub stars: 16
- Fold Change Calculation Across GroupsUse when when you have a quantified peak table (LC-MS feature intensities)Votes: 0GitHub stars: 16
- Force Field Minimization Mmff94Use when after RDKit generates multiple 3D conformers from ionized molecularVotes: 0GitHub stars: 16
- Form Encoded Request HandlingUse when when a web service must accept spectroscopic measurements (NMRVotes: 0GitHub stars: 16
- Format Agnostic Data IngestionUse when when you have mass spectrometry data in multiple formats (mzML,Votes: 0GitHub stars: 16
- Format Conversion ChemistryUse when when you have retrieved a user database entry (sequence or structureVotes: 0GitHub stars: 16
- Format Conversion Conditional LogicUse when you have generated a lipid spectral library (with lipid identities,Votes: 0GitHub stars: 16
- Formula Accuracy Metric EvaluationUse when when training or validating a deep learning model for molecularVotes: 0GitHub stars: 16
- Formula Annotation Capping By FrequencyUse when when preparing multi-formula MS/MS training data for a rescoreVotes: 0GitHub stars: 16
- Formula Annotation RankingUse when after generating candidate formula/adduct pairs from m/z databaseVotes: 0GitHub stars: 16
- Formula Assignment In Mass SpectrometryUse when you have m/z values from mass spectrometry imaging (or similarVotes: 0GitHub stars: 16
- Formula Based Network ConstructionUse when you have a formula-assigned dataset from FT-ICR MS (or otherVotes: 0GitHub stars: 16
- Formula Database Chemical Noise SamplingUse when when you need to generate synthetic MS/MS spectra with chemicalVotes: 0GitHub stars: 16
- Formula Database QueryingUse when you have calibrated m/z peak lists, configured adduct transformationsVotes: 0GitHub stars: 16
- Formula Deduplication And CountingUse when when you have loaded a chemical database (e.g., HMDB pickleVotes: 0GitHub stars: 16
- Formula Network Extraction From MzUse when you have an observed m/z value from spatially-resolved massVotes: 0GitHub stars: 16