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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Environment Dependency ManagementUse when when deploying Galaxy-M or similar multi-component metabolomicsVotes: 0GitHub stars: 16
- Error Handling ConfirmationUse when when implementing or auditing a data replacement method (e.g.,Votes: 0GitHub stars: 16
- Error Handling For Unsupported FormatsUse when building a file format dispatcher or initialization routineVotes: 0GitHub stars: 16
- Error Metric Comparison And BenchmarkingUse when you have predicted retention times from one or more machineVotes: 0GitHub stars: 16
- Error Report GenerationUse when when a user uploads a JSON project document to the Pairing OmicsVotes: 0GitHub stars: 16
- Euclidean Distance Computation For Spatial AlignmentUse when when you have preprocessed ST and SM AnnData objects with spatialVotes: 0GitHub stars: 16
- Evaluation Data Collection For Simulation AssessmentUse when you are developing or comparing new data-dependent acquisitionVotes: 0GitHub stars: 16
- Evaluation Data Object HandlingUse when after completing an Environment simulation run with save_evalVotes: 0GitHub stars: 16
- Exact Mass Accuracy CalculationUse when you have feature pairs identified by temporal correlation inVotes: 0GitHub stars: 16
- Exact Mass Database MatchingUse when after feature detection and alignment on raw MS data, when youVotes: 0GitHub stars: 16
- Exact Mass Lookup And Aggregation From Chemical DatabasesUse when after loading raw Agilent Unknowns Analysis CSV output and whenVotes: 0GitHub stars: 16
- Exact Mass Utilization For Compound IdentificationUse when you have a GC-MS dataset in CSV format with retention times,Votes: 0GitHub stars: 16
- Excel File Parsing For Metabolomics'Use when you have a preprocessed LC-MS peak table exported from peak-pickingVotes: 0GitHub stars: 16
- Executable Path ResolutionUse when when preparing to run QCxMS2 or similar multi-tool orchestrationVotes: 0GitHub stars: 16
- Execution Time Metric AnalysisUse when you have computation-time metrics from a gallery or benchmarkVotes: 0GitHub stars: 16
- Experiment Metadata Organization And TrackingUse when before initiating raw file conversion or feature extraction,Votes: 0GitHub stars: 16
- Experimental Design Metadata IntegrationUse when when you have LC-MS raw data and need to process it throughVotes: 0GitHub stars: 16
- Exploitation Exploration Trade Off BalancingUse when you are in the Bayesian optimization loop after fitting a GaussianVotes: 0GitHub stars: 16
- Expressionset Construction And Metadata AnnotationUse when after validating a peak table (either standardized format orVotes: 0GitHub stars: 16
- External Calibration Model FittingUse when you have acquired targeted mass spectrometry data with measuredVotes: 0GitHub stars: 16
- External Registry QueryingUse when your project JSON document contains genome identifiers but lacksVotes: 0GitHub stars: 16
- Extracellular Flux Constraint IntegrationUse when you have constraint-based metabolic models of multiple cellVotes: 0GitHub stars: 16
- Extracted Ion Chromatogram Eic VisualizationUse when after running MS1 extraction and prescreening on mzML filesVotes: 0GitHub stars: 16
- Extracted Ion Chromatogram GenerationUse when you have raw MS data (in Agilent .d, Thermo .raw, Bruker .Votes: 0GitHub stars: 16
- Extracted Ion Chromatogram InspectionUse when after running tardisPeaks() in screening mode or peak detectionVotes: 0GitHub stars: 16
- Extracted Ion Chromatogram Parameter ExtractionUse when after isolating TIC peak regions via sliding window analysisVotes: 0GitHub stars: 16
- Extracted Ion Chromatogram Peak Shape SimilarityUse when after features have been grouped by retention time similarityVotes: 0GitHub stars: 16
- Extracted Ion Chromatogram ProcessingUse when you have Thermo Fisher Orbitrap .raw files and need to locateVotes: 0GitHub stars: 16
- Extracted Ion Electropherogram GenerationUse when you have CE-MS raw data (mzML or netCDF format) containing aVotes: 0GitHub stars: 16
- Extraction Parameter Optimization Ppm Retention Time Ion MobilityUse when you are reconstructing targeted ion chromatograms (XIC) andVotes: 0GitHub stars: 16
- False Discovery Rate Control In Spectral MatchingUse when after performing spectral library matching (whether unmodifiedVotes: 0GitHub stars: 16
- False Discovery Rate ControlUse when you have generated candidate peptide-spectrum matches from aVotes: 0GitHub stars: 16
- False Discovery Rate Estimation UntargetedUse when performing untargeted metabolomics annotation (i.e., matchingVotes: 0GitHub stars: 16
- False Discovery Rate InterpretationUse when when you have executed database search pipelines (Dereplicator,Votes: 0GitHub stars: 16
- False Positive Annotation FilteringUse when after high-scoring spectral library matching (e.g., EQ moduleVotes: 0GitHub stars: 16
- False Positive Mitigation In AnnotationUse when you have implemented an automated feature annotation or adductVotes: 0GitHub stars: 16
- False Positive Mitigation TuningUse when after running Paramounter's peak-height optimization on XCMSVotes: 0GitHub stars: 16
- False Positive Negative Detection In Pattern MatchingUse when when reconstructing or validating the ColumnFinder componentVotes: 0GitHub stars: 16
- Fatty Acid Composition GenerationUse when you need to systematically enumerate all possible lipid speciesVotes: 0GitHub stars: 16
- Fatty Acyl Chain Variant IdentificationUse when when a metabolite feature has been assigned a top-rank lipidVotes: 0GitHub stars: 16
- Fda Repeatability Compliance AssessmentUse when you have completed NMR data quality control analysis and possessVotes: 0GitHub stars: 16
- Fdr Aware Psm Retention Strategy'Use when rescoring PSMs with machine learning or statistical modelsVotes: 0GitHub stars: 16
- Feature Ablation AnalysisUse when when you have a trained GNN model for molecular property predictionVotes: 0GitHub stars: 16
- Feature Abundance Correlation AnalysisUse when after initial retention-time-based feature grouping (e.g., usingVotes: 0GitHub stars: 16
- Feature Abundance Correlation GroupingUse when after performing retention-time-based feature grouping (e.g.,Votes: 0GitHub stars: 16
- Feature Abundance NormalizationUse when after peak picking (e.g., via MS-DIAL) and quality control filtering,Votes: 0GitHub stars: 16
- Feature Abundance Pattern Correlation AnalysisUse when after initial retention-time-based feature grouping has beenVotes: 0GitHub stars: 16
- Feature Abundance Pattern MatchingUse when after initial retention-time-based feature grouping when youVotes: 0GitHub stars: 16
- Feature Abundance Threshold ComparisonUse when after loading an MZmine3-exported feature quantification tableVotes: 0GitHub stars: 16
- Feature Alignment Error IdentificationUse when you have completed peak detection and feature alignment in metabolomicVotes: 0GitHub stars: 16