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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Feature Network Construction And PartitioningUse when you have a preprocessed LC-MS feature table (m/z, retentionVotes: 0GitHub stars: 16
- Feature Network Construction From Mass Spectrometry'Use when you have a preprocessed feature table (tab-delimited: featureVotes: 0GitHub stars: 16
- Feature Node Identifier MatchingUse when you have created a feature-based GNPS molecular network andVotes: 0GitHub stars: 16
- Feature Occurrence Counting Across SpectraUse when when you have parsed MS2 spectra from a single metabolomicsVotes: 0GitHub stars: 16
- Feature Pair Alignment Parameter OptimizationUse when after anchor selection and retention-time spline mapping haveVotes: 0GitHub stars: 16
- Feature Pair Mass RefinementUse when after temporal correlation has identified feature pairs withVotes: 0GitHub stars: 16
- Feature Pair Scoring In MetabolomicsUse when use this skill after XCMS feature detection and alignment onVotes: 0GitHub stars: 16
- Feature Pairing Confidence ScoringUse when you have two LC-MS feature tables (each with m/z, retentionVotes: 0GitHub stars: 16
- Feature Property Refinement From Training DataUse when you have a set of training LC-HRMS chromatograms (retentionVotes: 0GitHub stars: 16
- Feature Quality Assessment By Rsd Within ClassUse when after blank subtraction and background drift removal in an MS-DIALVotes: 0GitHub stars: 16
- Feature Quality Assessment MetricsUse when after nontargeted peak detection and segmentation has generatedVotes: 0GitHub stars: 16
- Feature Quality Assessment Via QvalueUse when you have loaded search results from an upstream proteomics databaseVotes: 0GitHub stars: 16
- Feature Quantification AnalysisUse when when you have loaded search result files from one or more DIA-MSVotes: 0GitHub stars: 16
- Feature Redundancy Reduction With Ion IdentityUse when when processing MZmine2/MZmine3 peak tables from LC–MS metabolomicsVotes: 0GitHub stars: 16
- Feature Retention Criteria ApplicationUse when after signal drift correction and batch effect removal (stepVotes: 0GitHub stars: 16
- Feature Similarity Network ConstructionUse when you have a filtered MS-DIAL peak list (post-generic filtering,Votes: 0GitHub stars: 16
- Feature Specificity CalculationUse when when you have a quantitative feature table from MZmine2/MZmine3Votes: 0GitHub stars: 16
- Feature Statistical AnnotationUse when after LC-MS feature detection, alignment, and quantificationVotes: 0GitHub stars: 16
- Feature Sub Group Refinement And ValidationUse when after initial retention-time-based feature grouping (e.Votes: 0GitHub stars: 16
- Feature Table Alignment And IntegrationUse when you have aligned feature tables (CSV format) paired with MS2Votes: 0GitHub stars: 16
- Feature Table Annotation And Provenance TrackingUse when after generating a filtered feature table from raw mass spectrometryVotes: 0GitHub stars: 16
- Feature Table Annotation StandardizationUse when after Blueshift or Gravity processing has produced a featureVotes: 0GitHub stars: 16
- Feature Table Annotation Table ConstructionUse when after feature extraction from XCMS or MS-Dial when you haveVotes: 0GitHub stars: 16
- Feature Table Annotation With Sample MetadataUse when your input is a feature intensity table (CSV or R data frame)Votes: 0GitHub stars: 16
- Feature Table Blank Intensity DetectionUse when after loading an MZmine3-exported feature quantification tableVotes: 0GitHub stars: 16
- Feature Table Consensus AggregationUse when you have detected feature tables from multiple LC-IMS-MS/MSVotes: 0GitHub stars: 16
- Feature Table Construction For Multivariate AnalysisUse when when you have high-resolution mass-spectrometry (HRMS) breathVotes: 0GitHub stars: 16
- Feature Table Export And FormattingUse when after completing feature detection, alignment, and optionalVotes: 0GitHub stars: 16
- Feature Table Export And ValidationUse when after executing an MZmine batch processing workflow on raw metabolomicsVotes: 0GitHub stars: 16
- Feature Table Filtering LogicUse when when you have a quantitative feature table (peak intensitiesVotes: 0GitHub stars: 16
- Feature Table Format ConversionUse when you have raw feature tables exported from NPP tools (XCMS, MZmineVotes: 0GitHub stars: 16
- Feature Table Format HandlingUse when transitioning feature intensity data between pipeline stagesVotes: 0GitHub stars: 16
- Feature Table Gap FillingUse when you have an aligned feature table from untargeted LC-MS withVotes: 0GitHub stars: 16
- Feature Table Generation From Aligned SpectraUse when after retention-time and m/z-based peak alignment has been completedVotes: 0GitHub stars: 16
- Feature Table Generation From ChromatographyUse when after retention-time correction and alignment of centroidedVotes: 0GitHub stars: 16
- Feature Table Integration And NormalizationUse when when you have MS1 feature tables from heterogeneous sources—e.g.,Votes: 0GitHub stars: 16
- Feature Table Matrix AssemblyUse when when you need to generate a realistic LC/GC-MS feature tableVotes: 0GitHub stars: 16
- Feature Table Moniker ManagementUse when when processing a metabolomics feature table through multipleVotes: 0GitHub stars: 16
- Feature Table Moniker Registration And VersioningUse when after Asari completes feature detection and produces multipleVotes: 0GitHub stars: 16
- Feature Table NormalizationUse when you have peak/feature tables from one or more peak picking toolsVotes: 0GitHub stars: 16
- Feature Table Parsing And LoadingUse when you have extracted volatile organic compound (VOC) featuresVotes: 0GitHub stars: 16
- Feature Table Quality ControlUse when when you have a feature intensity matrix (samples × compounds)Votes: 0GitHub stars: 16
- Feature Table Row Count ValidationUse when after peak quality filtering has been applied to a compositeVotes: 0GitHub stars: 16
- Feature Table StandardizationUse when you have feature tables from external metabolomics softwareVotes: 0GitHub stars: 16
- Feature Table Subsetting'Use when after loading an MS-DIAL feature table when you need to separateVotes: 0GitHub stars: 16
- Feature To Metabolite Network PropagationUse when you have an untargeted metabolomics feature table (m/z, retentionVotes: 0GitHub stars: 16
- Feature Vector Similarity Search PreparationUse when you have millions of MS/MS spectra in mzML, mzXML, or MGF formatVotes: 0GitHub stars: 16
- Feature Wise Spectrum Count AggregationUse when when you have extracted concatenated MS/MS spectra for multipleVotes: 0GitHub stars: 16
- Feedforward Neural Network Architecture DesignUse when you have preprocessed molecular structures as fixed-length featureVotes: 0GitHub stars: 16
- Few Shot Learning Calibration DesignUse when you have experimental retention times measured on a source chromatographicVotes: 0GitHub stars: 16