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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Kegg Pathway Prediction From SpectraUse when you have untargeted MS2 spectral data (in MS2MP-compatible format)Votes: 0GitHub stars: 16
- Kendrick Mass CalculationUse when you have uploaded m/z values from a high-resolution mass spectrometryVotes: 0GitHub stars: 16
- Kendrick Mass Defect CalculationUse when you have a feature list from LC- or GC-HRMS analysis (with m/z,Votes: 0GitHub stars: 16
- Keras Regularizer Api IntegrationUse when when extending an existing neural network class (e.g., SiameseModel)Votes: 0GitHub stars: 16
- Keras Tensorflow Model CompilationUse when you have defined a Keras model architecture (convolutional andVotes: 0GitHub stars: 16
- Kernel Regression Learning From Spectral Fingerprint PairsUse when when you have a training set of MS2 spectra with known chemicalVotes: 0GitHub stars: 16
- Khipu Grid Offset MappingUse when you have a set of ions detected in LC-MS data that are suspectedVotes: 0GitHub stars: 16
- Knime Workflow OrchestrationUse when you have raw LC-MS data (mzML, NetCDF) from multiple runs thatVotes: 0GitHub stars: 16
- Knn Nearest Neighbor Matching For Spot CorrespondenceUse when when integrating two spatial omics modalities (ST and SM) measuredVotes: 0GitHub stars: 16
- Knowledge Data Driven Layer IntegrationUse when you have untargeted metabolomics data (MS/MS spectra) and needVotes: 0GitHub stars: 16
- Knowledge Graph Generation And ValidationUse when after completing all per-sample annotation steps (molecularVotes: 0GitHub stars: 16
- Knowledge Graph Integration DesignUse when designing a metabolite annotation workflow that must simultaneouslyVotes: 0GitHub stars: 16
- Kovats Retention Index Extraction And AssignmentUse when you have compiled a multi-source EI library (NIST, RIKEN, MoNA,Votes: 0GitHub stars: 16
- Landmark Peak Selection And FilteringUse when when preparing mass tracks for retention-time (RT) alignmentVotes: 0GitHub stars: 16
- Lantibiotic Structure AnnotationUse when you have (1) genomic data from a Streptomyces or other RiPP-producingVotes: 0GitHub stars: 16
- Laplacian Embedding Spectral AlignmentUse when you have two or more MS/MS fragmentation spectra (with precursorVotes: 0GitHub stars: 16
- Large Scale All Pairs Similarity BenchmarkingUse when you have multiple competing spectral similarity scoring methodsVotes: 0GitHub stars: 16
- Large Scale Data RetrievalUse when you have a query mass spectrum (or a metabolite reference spectrumVotes: 0GitHub stars: 16
- Large Scale Database ConstructionUse when you have a collection of molecular structures (as SMILES orVotes: 0GitHub stars: 16
- Large Scale Spectral MatchingUse when you have preprocessed mass spectra (peak-filtered, metadata-cleaned)Votes: 0GitHub stars: 16
- Laser Ablation Isotope Image InterpretationUse when you have imported a raw LA-ICP-MS raster image (line-by-line,Votes: 0GitHub stars: 16
- Latent Dirichlet Allocation Model TrainingUse when when you have preprocessed MS/MS spectral data (filtered, noise-reduced,Votes: 0GitHub stars: 16
- Latent Dirichlet Allocation Topic InferenceUse when you have a preprocessed corpus of mass spectrometry spectraVotes: 0GitHub stars: 16
- Latent Feature InterpretationUse when you have imaging mass spectrometry (IMS) data preprocessed intoVotes: 0GitHub stars: 16
- Latent Space Dimensionality ReductionUse when you have imaging mass spectrometry (IMS) datasets where peakVotes: 0GitHub stars: 16
- Lc Hrms 2d Area StandardizationUse when after detecting local-maxima in LC-HRMS profile mode datasetsVotes: 0GitHub stars: 16
- Lc Hrms Data Preprocessing PipelineUse when you have raw LC-HRMS metabolomics data in .mzML or .abf formatVotes: 0GitHub stars: 16
- Lc Hrms Data Processing EvaluationUse when you have processed the same set of untargeted LC/HRMS filesVotes: 0GitHub stars: 16
- Lc Hrms Metabolomics Data ProcessingUse when you have LC-HRMS raw data files (.mzML or .abf format) fromVotes: 0GitHub stars: 16
- Lc Ms Adduct Pattern DetectionUse when when you have statistically significant features from multi-assayVotes: 0GitHub stars: 16
- Lc Ms Data CalibrationUse when when you have paired LC-MS measurements from labeled and unlabeledVotes: 0GitHub stars: 16
- Lc Ms Data Pipeline ArchitectureUse when you have vendor-format LC-MS acquisition files (.raw, .d, .ms)Votes: 0GitHub stars: 16
- Lc Ms Data Preprocessing'Use when you have raw mzML files and corresponding feature tables (CSVVotes: 0GitHub stars: 16
- Lc Ms Data Structure ValidationUse when before launching TARDIS peak detection on a new LC–MS datasetVotes: 0GitHub stars: 16
- Lc Ms Dataset Acquisition And CurationUse when when beginning an untargeted LC-MS metabolomics study and needVotes: 0GitHub stars: 16
- Lc Ms Eic Plot InterpretationUse when after executing TARDIS in screening_mode = TRUE on centroidedVotes: 0GitHub stars: 16
- Lc Ms Feature Alignment Cross DatasetUse when you have two peak-picked, conventionally aligned LC-MS metabolomicsVotes: 0GitHub stars: 16
- Lc Ms Feature Extraction And AlignmentUse when you have centroid mzML files from LC-MS experiments (convertedVotes: 0GitHub stars: 16
- Lc Ms Feature Grouping And CompoundingUse when after chromatographic peak detection on preprocessed LC-MS data,Votes: 0GitHub stars: 16
- Lc Ms Feature Grouping By Retention TimeUse when immediately after chromatographic peak detection (findChromPeaks)Votes: 0GitHub stars: 16
- Lc Ms Feature M Z Rt ExtractionUse when you have preprocessed LC-MS intensity data (e.Votes: 0GitHub stars: 16
- Lc Ms Feature Quality AssessmentUse when you have generated feature tables from LC-MS data using differentVotes: 0GitHub stars: 16
- Lc Ms Feature Quality ScoringUse when immediately after peak detection and feature table generationVotes: 0GitHub stars: 16
- Lc Ms Gradient Encoding Vector RepresentationUse when when you have a set of candidate LC gradients (parameter combinations)Votes: 0GitHub stars: 16
- Lc Ms Mass Matching Reference BuildingUse when at the start of an untargeted LC-MS annotation pipeline whenVotes: 0GitHub stars: 16
- Lc Ms Output ValidationUse when after executing a Nextflow-based LC-HRMS metabolomics workflowVotes: 0GitHub stars: 16
- Lc Ms Peak Feature EngineeringUse when you have LC-MS feature tables with m/z and retention time coordinatesVotes: 0GitHub stars: 16
- Lc Ms Peak QuantificationUse when after a CNN-Transformer peak detection model has been run onVotes: 0GitHub stars: 16
- Lc Ms Profile Data SegmentationUse when you have raw profile (not centroided) LC-MS data in .mzML formatVotes: 0GitHub stars: 16
- Lc Ms Quality Metric ComputationUse when after performing peak detection on centroided .mzML LC-MS dataVotes: 0GitHub stars: 16