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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Ion Mobility Spectrometry Peak ExtractionUse when after peaks have been detected in aligned GCIMS samples usingVotes: 0GitHub stars: 16
- Ion Mode Specific Ccs Model GenerationUse when you have tunemix reference data acquired in both positive andVotes: 0GitHub stars: 16
- Ion Species Annotation AssignmentUse when after temporal correlation has identified feature pairs withVotes: 0GitHub stars: 16
- Ion Species Confirmation ValidationUse when after you have identified candidate ion-species pairs throughVotes: 0GitHub stars: 16
- Ion Target Quality Monitoring'Use when you have MS1 data from multiple samples and need to assessVotes: 0GitHub stars: 16
- Ion To Molecule Relationship MappingUse when after dereplication and cosine similarity clustering have beenVotes: 0GitHub stars: 16
- Ion Trace Extraction And FilteringUse when you have CE-MS raw data (mzML or netCDF format) containing aVotes: 0GitHub stars: 16
- Ion Tree Structure Optimization And Trunk EstablishmentUse when after you have partitioned a feature network into connectedVotes: 0GitHub stars: 16
- Ion Type Assignment VerificationUse when after calling MsmsSpectrum.annotate_proforma() to assign fragmentVotes: 0GitHub stars: 16
- Ion Type Classification And FilteringUse when you have an MS/MS spectrum and a ProForma 2.0 peptidoform specification,Votes: 0GitHub stars: 16
- Ionisation Method Hardware CorrespondenceUse when when evaluating whether a mass spectrometry analysis platformVotes: 0GitHub stars: 16
- Ionization Mode And Column Mode SeparationUse when your LC-MS peak table from MS-DIAL or similar software containsVotes: 0GitHub stars: 16
- Ionization Mode AnnotationUse when when converting MS/MS spectra from .msp format library filesVotes: 0GitHub stars: 16
- Ionization Mode ClassificationUse when when converting raw MS/MS spectral records (e.g. from .msp format)Votes: 0GitHub stars: 16
- Ionization Mode Detection From Mass Spectrometry DataUse when when you have raw LC-MS data in mzML format (converted fromVotes: 0GitHub stars: 16
- Ionization Mode HandlingUse when your MZmine MGF and CSV input files contain mixed or ambiguousVotes: 0GitHub stars: 16
- Ionization Mode Inference From Acquisition MetadataUse when when beginning preprocessing of a new LC-MS dataset with mzMLVotes: 0GitHub stars: 16
- Ionization Mode Merging And ReconciliationUse when you have acquired MS-DIAL peak lists in both positive and negativeVotes: 0GitHub stars: 16
- Ionization Mode Peak Retention ComparisonUse when when you have loaded a raw mass spectrum (e.g. ESI_NEG_SRFA.Votes: 0GitHub stars: 16
- Ionization Mode Specific Preprocessing HandlingUse when you have raw MS/MS spectra in supported formats (.mgf, .mzML,Votes: 0GitHub stars: 16
- Ionization Polarity Selection And FilteringUse when loading raw mass spectrometry data (MGF, mzML, or msp format)Votes: 0GitHub stars: 16
- Ionization State PredictionUse when when you have SMILES strings representing neutral organic moleculesVotes: 0GitHub stars: 16
- Irt Peptide Calibration And ScoringUse when when you need to assess whether retention times measured onVotes: 0GitHub stars: 16
- Irt Peptide Standard MatchingUse when you have a Thermo Fisher Scientific .raw file from an LC-MSVotes: 0GitHub stars: 16
- Isf Feature Table ExportUse when after completing Part 4 (Identification of ISF Features) inVotes: 0GitHub stars: 16
- Isf Relationship Tree ConstructionUse when after completing ISFrag Part 4 (Identification of ISF Features)Votes: 0GitHub stars: 16
- Isobaric Ion Detection MsiUse when you have loaded MSI data with an extracted peak list and needVotes: 0GitHub stars: 16
- Isobaric Ion Misclassification DocumentationUse when after matrix annotation has been performed on mass spectrometryVotes: 0GitHub stars: 16
- Isotope Adduct Anchor IdentificationUse when when you have extracted mass tracks (EICs) from individual LC-MSVotes: 0GitHub stars: 16
- Isotope Adduct AnnotationUse when after completing peak picking, sample alignment, and beforeVotes: 0GitHub stars: 16
- Isotope And Adduct Pattern RecognitionUse when when processing MS1 mass tracks from a single sample and youVotes: 0GitHub stars: 16
- Isotope Corrected Image QuantitationUse when after isotopic correction has been performed on MSI ion imagesVotes: 0GitHub stars: 16
- Isotope Labeling Data IntegrationUse when you have LC-MS peak tables from parallel unlabeled and labeledVotes: 0GitHub stars: 16
- Isotope Labeling Data InterpretationUse when you have LC-MS FAM measurements from an isotope-labeling experimentVotes: 0GitHub stars: 16
- Isotope Labelling Feature InterpretationUse when after basepeak_finder has identified base peaks from isotope-labelledVotes: 0GitHub stars: 16
- Isotope Mass Offset EnumerationUse when you have a detected feature table (m/z, drift_time, retention_time,Votes: 0GitHub stars: 16
- Isotope Mass Table Reference Management'Use when when building a mass spectrometry analysis pipeline that requiresVotes: 0GitHub stars: 16
- Isotope Pattern And Adduct AssignmentUse when after feature detection has produced a TSV feature table (fromVotes: 0GitHub stars: 16
- Isotope Pattern Annotation In Feature DetectionUse when when performing feature detection on centroided DDA mzML filesVotes: 0GitHub stars: 16
- Isotope Pattern DetectionUse when you have MS1-format mass spectrometry files and need to determineVotes: 0GitHub stars: 16
- Isotope Pattern Matching And FilteringUse when you have high-resolution centroided mzML files from OrbitrapVotes: 0GitHub stars: 16
- Isotope Pattern Spectral MatchingUse when when you have LC/MS feature data with observed m/z and intensityVotes: 0GitHub stars: 16
- Isotopic Enrichment QuantificationUse when you have MS2 spectra from peptides with known stable isotopeVotes: 0GitHub stars: 16
- Isotopic Enrichment SimulationUse when you have a peptide sequence and need to predict its theoreticalVotes: 0GitHub stars: 16
- Isotopic Envelope CalculationUse when when you have one or more peptide sequences (as strings) andVotes: 0GitHub stars: 16
- Isotopic Envelope Generation At Fixed EnrichmentUse when when you have a peptide sequence, MS2 fragment charge states,Votes: 0GitHub stars: 16
- Isotopic Impurity AccountingUse when when analyzing LC-MS data from stable isotope labeling experimentsVotes: 0GitHub stars: 16
- Isotopic Pattern Detection And MergingUse when your peak table contains features suspected of being artifactsVotes: 0GitHub stars: 16
- Isotopic Pattern MatchingUse when after feature detection has produced candidate formula–adductVotes: 0GitHub stars: 16
- Isotopic Pattern Mispicking DetectionUse when you have a peak table from tandem MS preprocessing (e.g., MS-DIAL,Votes: 0GitHub stars: 16