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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Lc Ms Retention Time AdjustmentUse when you have centroided .mzML LC–MS data with multiple sample runsVotes: 0GitHub stars: 16
- Lc Ms Roi Annotation InterpretationUse when when you have extracted LC-MS ROI windows (m/z × retention timeVotes: 0GitHub stars: 16
- Lc Ms Scan Acquisition OrchestrationUse when when you have a curated list of chemical compounds (real orVotes: 0GitHub stars: 16
- Lc Ms Spectral Data ImportUse when you have raw LC-MS/MS spectral data in .mgf format (or vendor-specificVotes: 0GitHub stars: 16
- Lchrms Chromatographic Peak Boundary ExtractionUse when you have a set of target molecules with known molecular formula,Votes: 0GitHub stars: 16
- Lcims Msms Data Preprocessing Peak DetectionUse when you have loaded mzML.gz or HDF5-formatted raw LC-IMS-MS/MS dataVotes: 0GitHub stars: 16
- Lcms Data Format HandlingUse when you have raw LC-MS data from a vendor instrument or in netCDFVotes: 0GitHub stars: 16
- Lcms Data Format ParsingUse when when you have raw LC/MS data in mzML format and need to executeVotes: 0GitHub stars: 16
- Lcms Feature ClassificationUse when you have an LCMS feature table annotated with MS2 spectral dataVotes: 0GitHub stars: 16
- Lcms Feature Detection And QuantificationUse when you have raw LC-MS data (mzML or equivalent format) from a metabolomicsVotes: 0GitHub stars: 16
- Lcms Feature ExtractionUse when when you have raw LC-MS chromatographic data (mzML or vendorVotes: 0GitHub stars: 16
- Lcms Feature Probability ScoringUse when you have an untargeted LC/MS feature table (m/z, retention time,Votes: 0GitHub stars: 16
- Lcms Feature Relationship ExportUse when after ISFrag has completed identification of in-source fragmentVotes: 0GitHub stars: 16
- Lcms Feature Table ConstructionUse when you have centroided, single-polarity mzML files from DDA LC-MSVotes: 0GitHub stars: 16
- Lcms Feature Table ParsingUse when you have raw nontargeted LCMS feature tables from one or moreVotes: 0GitHub stars: 16
- Lcms Metabolomics Data ProcessingUse when you have raw LC-HRMS metabolomics data in .mzML or .Votes: 0GitHub stars: 16
- Lcms Peak Alignment And AnnotationUse when you have an XCMS-processed feature set (XCMSet object) fromVotes: 0GitHub stars: 16
- Lcms Peak Detection And AlignmentUse when you have one or more raw mzXML or mzML LCMS data files (fromVotes: 0GitHub stars: 16
- Lcms Peak Intensity FilteringUse when after XCMS peak picking, alignment, and grouping when you haveVotes: 0GitHub stars: 16
- Lcms Raw Data ImportUse when you have raw LC/MS data in mzML or mzXML format and need toVotes: 0GitHub stars: 16
- Lcms Result Table StructureUse when after completing Part 4 (Identification of ISF Features) inVotes: 0GitHub stars: 16
- Lcms Retention Time AlignmentUse when when XCMS-aligned LC-MS data shows coefficient of variationVotes: 0GitHub stars: 16
- Lcms Spectral Peak ClassificationUse when you have raw LC-MS spectral peak data (in the format providedVotes: 0GitHub stars: 16
- Lcms Target Visibility ScreeningUse when after loading centroided .mzML LC–MS runs and before executingVotes: 0GitHub stars: 16
- Lcms Workflow OrchestrationUse when starting from raw LC-MS spectral files (mzML or mzXML format)Votes: 0GitHub stars: 16
- Lda Convergence Monitoring And IterationUse when after configuring LDA hyperparameters (alpha, beta, number ofVotes: 0GitHub stars: 16
- Lda Model Training ConvergenceUse when you have a preprocessed bag-of-fragments corpus derived fromVotes: 0GitHub stars: 16
- Lda Result Database PersistenceUse when after running gensim LDA on a corpus of MS2 fragmentation features,Votes: 0GitHub stars: 16
- Least Squares Optimization 1dUse when when you have a 1D signal array (e.g., extracted ion chromatogram,Votes: 0GitHub stars: 16
- Least Squares Optimization Spectral DeconvolutionUse when after GCMSFormer has predicted the pure mass spectral matrixVotes: 0GitHub stars: 16
- Left Censored Missing Value ClassificationUse when you have a metabolomics dataset (LC/MS or GC/MS) with missingVotes: 0GitHub stars: 16
- Left Censored Missingness SimulationUse when when you have a complete metabolomics abundance table (e.g.,Votes: 0GitHub stars: 16
- Level 4 Annotation AssignmentUse when after khipu has grouped LC-MS features into empirical compoundsVotes: 0GitHub stars: 16
- Lexer Tokenizer ImplementationUse when when you need to parse a domain-specific query language (likeVotes: 0GitHub stars: 16
- Lexical Analysis TokenizationUse when you have a mass-spectrometry query string written in MassQLVotes: 0GitHub stars: 16
- Lexical Tokenization And Grammar DesignUse when you need to enable users to express complex domain-specificVotes: 0GitHub stars: 16
- Library Analogue Search BranchingUse when when you need to reconstruct or validate the control-flow architectureVotes: 0GitHub stars: 16
- Library Import ValidationUse when you have raw .msp spectral library files (e.g., from MassBankVotes: 0GitHub stars: 16
- Library Integration WorkflowUse when you have custom lipid entries (e.g., synthetic lipids, rareVotes: 0GitHub stars: 16
- Library Object ValidationUse when after applying mspcompiler pipeline transformation steps (e.g.,Votes: 0GitHub stars: 16
- Library Spectrum Database Format ParsingUse when you have experimental MS/MS spectra (from mzML, mzXML, or rawVotes: 0GitHub stars: 16
- Library Spectrum Database SearchingUse when you have an unknown electron ionization (EI) mass spectrum andVotes: 0GitHub stars: 16
- Linear Algebra Peak ReconstructionUse when after a Transformer model (e.g. GCMSFormer) has predicted theVotes: 0GitHub stars: 16
- Linear Axis Spatial AnalysisUse when you have deposited mass spectrometry imaging datasets in NetCDFVotes: 0GitHub stars: 16
- Linear Regression Fitting For ChromatographyUse when you have extracted retention times at peak maxima (rtFittedAPEX)Votes: 0GitHub stars: 16
- Linear Score Calculation From CoefficientsUse when when you have 1H-NMR metabolite measurements from NightingaleVotes: 0GitHub stars: 16
- Lineshape Convolution And BroadeningUse when after generating theoretical spin multiplets for individualVotes: 0GitHub stars: 16
- Link Graph Assembly And TraversalUse when after running a scoring algorithm (e.g., MetcalfScoring) onVotes: 0GitHub stars: 16
- Link Scoring Metcalf AlgorithmUse when you have loaded GCFs (from AntiSMASH via BigScape clustering),Votes: 0GitHub stars: 16
- Linux Command Line ExecutionUse when you have vendor-specific raw mass spectrometry data (ThermoFisherVotes: 0GitHub stars: 16