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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Metabolite Feature FlaggingUse when after drift correction and before imputation, when you haveVotes: 0GitHub stars: 16
- Metabolite Feature Grouping By Adduct IsotopeUse when immediately after generating a feature table (m/z, retentionVotes: 0GitHub stars: 16
- Metabolite Feature Grouping By CompoundUse when after XCMS feature detection and retention time correction,Votes: 0GitHub stars: 16
- Metabolite Feature Intensity NormalizationUse when after imputation and batch-effect correction (OUKS steps 3–4)Votes: 0GitHub stars: 16
- Metabolite Feature M Z MatchingUse when you have (1) a benchmark dataset of known molecules with accurateVotes: 0GitHub stars: 16
- Metabolite Feature Matching Across DatasetsUse when you have two independent LC-MS untargeted metabolomic featureVotes: 0GitHub stars: 16
- Metabolite Feature Normalization Across BatchesUse when after data merging and cleanup (blank removal) and before univariateVotes: 0GitHub stars: 16
- Metabolite Feature NormalizationUse when you have loaded two or more nontargeted LCMS feature tablesVotes: 0GitHub stars: 16
- Metabolite Feature OrganizationUse when you have raw imzML and ibd (ion binary data) files from spatialVotes: 0GitHub stars: 16
- Metabolite Feature Quality ControlUse when you have a metabolomic SummarizedExperiment object with replicateVotes: 0GitHub stars: 16
- Metabolite Feature Quantification Table ParsingUse when when you have completed feature detection in MZmine3 or similarVotes: 0GitHub stars: 16
- Metabolite Feature Table InterpretationUse when immediately after executing the MetaboAnalystR 4.0 unified LC-MSVotes: 0GitHub stars: 16
- Metabolite Feature Table NormalizationUse when you have selected a subset of ReDU public tandem MS files withVotes: 0GitHub stars: 16
- Metabolite Feature Treemap VisualizationUse when after applying mpactr's filter suite (filter_mispicked_ions,Votes: 0GitHub stars: 16
- Metabolite Filter Status ExtractionUse when after chaining one or more mpactr filter operations (mispicked,Votes: 0GitHub stars: 16
- Metabolite Fold Change Statistical TestingUse when you have XCMS-processed LC/MS peak data from dual-labeled (e.g.,Votes: 0GitHub stars: 16
- Metabolite Formula PredictionUse when when you have a known drug's chemical formula and need to generateVotes: 0GitHub stars: 16
- Metabolite Identification From Transformation RulesUse when when you have a small-molecule structure (SMILES, MOL, or SDFVotes: 0GitHub stars: 16
- Metabolite Identification ValidationUse when you have extended a metabolite identification tool (such asVotes: 0GitHub stars: 16
- Metabolite Identifier AnnotationUse when you have observed compounds (from LC-MS/MS, GC-MS, NMR, or otherVotes: 0GitHub stars: 16
- Metabolite Identifier ConversionUse when your metabolomics dataset contains metabolite identifiers inVotes: 0GitHub stars: 16
- Metabolite Identifier Mapping To LipidsUse when you have (1) peak-picked LC-MS AIF features in a feature tableVotes: 0GitHub stars: 16
- Metabolite Identifier MappingUse when after peak detection and MS1 feature picking from merged FIA-MSVotes: 0GitHub stars: 16
- Metabolite Identity Ground Truth ValidationUse when after constructing candidate feature pair alignments and retention-timeVotes: 0GitHub stars: 16
- Metabolite Intensity AlignmentUse when you have raw lipidomic and metabolomic data files generatedVotes: 0GitHub stars: 16
- Metabolite Intensity Matrix ExtractionUse when when you have raw mass spectrometry peak intensity data (rowsVotes: 0GitHub stars: 16
- Metabolite Ion ConsolidationUse when after chromatographic peak detection in LC-MS data, when youVotes: 0GitHub stars: 16
- Metabolite Kegg Pathway EnrichmentUse when you have an annotated list of metabolite compounds (with associatedVotes: 0GitHub stars: 16
- Metabolite Level Expression SummarizationUse when after loading spatial metabolomics data (from CSV, imzML, orVotes: 0GitHub stars: 16
- Metabolite Library Curation Ms1 RtUse when when you have processed authentic standards with LC-MS in positiveVotes: 0GitHub stars: 16
- Metabolite Library Entry GenerationUse when you have an experimental MS/MS spectrum (from MassBank or yourVotes: 0GitHub stars: 16
- Metabolite Lipid Annotation RankingUse when you have LC–MS All-ion fragmentation chromatograms processedVotes: 0GitHub stars: 16
- Metabolite Mass Database MatchingUse when after features have been grouped into empirical compounds (empCpds)Votes: 0GitHub stars: 16
- Metabolite Mass Lookup PreparationUse when when beginning an untargeted LC-MS annotation workflow, beforeVotes: 0GitHub stars: 16
- Metabolite Mass To Charge Ratio MatchingUse when you have a negative-mode or positive-mode LC-MS feature tableVotes: 0GitHub stars: 16
- Metabolite Metadata Column MatchingUse when validating mwTab files deposited to the Metabolomics WorkbenchVotes: 0GitHub stars: 16
- Metabolite Metadata IntegrationUse when when you have separate quantification data (abundance matrix),Votes: 0GitHub stars: 16
- Metabolite Ms Ms AnnotationUse when when you have SWATH-MS raw data (mzML or vendor format) containingVotes: 0GitHub stars: 16
- Metabolite Network Format ConversionUse when after downloading GNPS molecular networking results (from GNPS1Votes: 0GitHub stars: 16
- Metabolite Pathway Annotation MappingUse when after peak detection and statistical association or classificationVotes: 0GitHub stars: 16
- Metabolite Peak AnnotationUse when after peak detection has identified significant m/z and retentionVotes: 0GitHub stars: 16
- Metabolite Peak Assignment From NmrUse when you have a 1D ¹H NMR spectrum (as chemical shift vs. intensity)Votes: 0GitHub stars: 16
- Metabolite Phenotype Association Partial CorrelationUse when you have a SummarizedExperiment object containing NMR or MSVotes: 0GitHub stars: 16
- Metabolite Prediction Comparison Baseline ModelsUse when you have paired microbiome (genus-level 16S or functional profiles)Votes: 0GitHub stars: 16
- Metabolite Prediction Pathway SelectionUse when when you have a small-molecule structure (SMILES, MOL, or SDFVotes: 0GitHub stars: 16
- Metabolite Protein Network ConstructionUse when after generating metabolite-disease correlation data and proteinVotes: 0GitHub stars: 16
- Metabolite Pubchemcid Annotation MappingUse when after metabolite annotation has been completed (level-1 confidenceVotes: 0GitHub stars: 16
- Metabolite Quality Control FilteringUse when after feature extraction (Asari) has produced a full featureVotes: 0GitHub stars: 16
- Metabolite Quality Metric AssessmentUse when after drift correction has been applied to a MetaboSet object,Votes: 0GitHub stars: 16
- Metabolite Quantification Accuracy AssessmentUse when you have executed mzExacto() on a preprocessed GC-MS datasetVotes: 0GitHub stars: 16