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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Metabolite Rank Performance EvaluationUse when after training an ensemble model (MLP, GNN, or ESP) on spectralVotes: 0GitHub stars: 16
- Metabolite Ranking By Annotation ScoreUse when when you have generated a set of candidate metabolites for aVotes: 0GitHub stars: 16
- Metabolite Ratio Batch CorrectionUse when your input is a SummarizedExperiment containing multiple batchesVotes: 0GitHub stars: 16
- Metabolite Reference Library FilteringUse when you have defined one or more proton NMR spectral regions-of-interestVotes: 0GitHub stars: 16
- Metabolite Score ProjectionUse when you have Nightingale Health 1H-NMR metabolomics assay outputVotes: 0GitHub stars: 16
- Metabolite Set Activity ScoringUse when when you have log2-normalized, standardized peak intensity dataVotes: 0GitHub stars: 16
- Metabolite Set AnalysisUse when you have a metabolite intensity matrix (rows=metabolites orVotes: 0GitHub stars: 16
- Metabolite Set Annotation MappingUse when you have a metabolomics peak intensity matrix with feature IDsVotes: 0GitHub stars: 16
- Metabolite Set Decomposition PlageUse when you have peak intensity data from metabolomics experiments withVotes: 0GitHub stars: 16
- Metabolite Signal Drift DetectionUse when when you have multi-batch metabolomics data (SummarizedExperimentVotes: 0GitHub stars: 16
- Metabolite Signal Extraction From Lc HrmsUse when you have raw untargeted LC/HRMS data (mzXML, mzML, or netCDFVotes: 0GitHub stars: 16
- Metabolite Similarity ScoringUse when you have an unknown compound's mass spectrum (m/z peaks andVotes: 0GitHub stars: 16
- Metabolite Spectral Data MergingUse when you have two or more mass spectral libraries in different formatsVotes: 0GitHub stars: 16
- Metabolite Spectral MatchingUse when you have an experimental mass spectrum (or a set of spectraVotes: 0GitHub stars: 16
- Metabolite Stability Assessment Across CohortsUse when you have uploaded a pre-analytical data table containing sampleVotes: 0GitHub stars: 16
- Metabolite Stoichiometry ComputationUse when when you have quantified intracellular metabolite abundancesVotes: 0GitHub stars: 16
- Metabolite Structural Annotation IntegrationUse when after statistical analysis (e.g., MB-PLS with permutation testing)Votes: 0GitHub stars: 16
- Metabolite Structural Network ConstructionUse when after MamsiStructSearch has completed structural clusteringVotes: 0GitHub stars: 16
- Metabolite Structure Annotation IntegrationUse when you have a set of candidate transformed structures generatedVotes: 0GitHub stars: 16
- Metabolite Structure Format ConversionUse when when importing candidate metabolite structures from public chemicalVotes: 0GitHub stars: 16
- Metabolite Structure PredictionUse when you have a parent compound (or set of compounds) in SMILES,Votes: 0GitHub stars: 16
- Metabolite Tandem Ms Library CurationUse when you have multiple tandem MS/MS libraries in different formatsVotes: 0GitHub stars: 16
- Metabolite Target List FormattingUse when you have a raw LC–MS compound metadata file (xlsx or csv) withVotes: 0GitHub stars: 16
- Metabolite Taxonomy Database LookupUse when when you have MS/MS-annotated features from a natural extractVotes: 0GitHub stars: 16
- Metabolite To Gene MappingUse when you have metabolomic data (e.g., from LC-MS or GC-MS comparingVotes: 0GitHub stars: 16
- Metabologenomic Database ConstructionUse when you have genome FASTA or annotated genome files (antiSMASH .gbk,Votes: 0GitHub stars: 16
- Metabolomic Data Format StandardizationUse when you have raw peak table data from liquid chromatography–massVotes: 0GitHub stars: 16
- Metabolomic Data Structure FormattingUse when after peak detection in MZmine2 has produced an MGF file (containingVotes: 0GitHub stars: 16
- Metabolomic Dataset Preprocessing And NormalizationUse when you have raw or minimally processed FT-ICR MS peak tables inVotes: 0GitHub stars: 16
- Metabolomic Feature AlignmentUse when you have two or more CSV feature tables from independent metabolomicVotes: 0GitHub stars: 16
- Metabolomic Feature Extraction From MzmlUse when you have centroid mzML files from LC-MS acquisitions and needVotes: 0GitHub stars: 16
- Metabolomic Feature ImputationUse when when a preprocessed metabolomic feature table (e.g., MS-DialVotes: 0GitHub stars: 16
- Metabolomic Feature MatchingUse when you have two LC-MS feature tables (each with m/z, retentionVotes: 0GitHub stars: 16
- Metabolomic Feature Retention StatisticsUse when after applying the CV_ratio() filtering function to a normalizedVotes: 0GitHub stars: 16
- Metabolomic Feature Statistical Hypothesis TestingUse when when you have a normalized and batch-corrected feature abundanceVotes: 0GitHub stars: 16
- Metabolomic Feature Table AssemblyUse when when you have LC-MS data (mzML or netCDF format) and a pre-definedVotes: 0GitHub stars: 16
- Metabolomic Feature Table FilteringUse when after feature detection (e.g., Asari processing of mzML filesVotes: 0GitHub stars: 16
- Metabolomic Feature Table ImputationUse when after feature detection and peak alignment have produced a featureVotes: 0GitHub stars: 16
- Metabolomic Feature Table InterpretationUse when after quality control, filtering, and normalization of an MS-DIAL-derivedVotes: 0GitHub stars: 16
- Metabolomic Feature Table ProcessingUse when you have a metabolomics feature table (rows=features, columns=samples)Votes: 0GitHub stars: 16
- Metabolomic Feature Tree ConstructionUse when when you have preprocessed LC-MS/MS data (MGF file with MS1Votes: 0GitHub stars: 16
- Metabolomic Heatmap VisualizationUse when after completing feature annotation and reaction assignmentVotes: 0GitHub stars: 16
- Metabolomic Meta Analysis Workflow DesignUse when you have multiple metabolomic studies with aggregate summaryVotes: 0GitHub stars: 16
- Metabolomic Molecular Family Networking GnpsUse when when you have untargeted LC-MS/MS spectral data from microbialVotes: 0GitHub stars: 16
- Metabolomic Peak Quality AssessmentUse when after peak detection in untargeted LC/HRMS workflows, when youVotes: 0GitHub stars: 16
- Metabolomic Signal QuantificationUse when you have raw untargeted LC/MS data in open mzML or mzXML formatVotes: 0GitHub stars: 16
- Metabolomic Spectral Annotation And Molecular Family ClusteringUse when when you have raw or GNPS-processed MS2 spectral data from microbialVotes: 0GitHub stars: 16
- Metabolomics Chemical Mixture Generation From HmdbUse when you need to create realistic, diverse chemical populations forVotes: 0GitHub stars: 16
- Metabolomics Classifier TrainingUse when you have a preprocessed metabolomics feature matrix (expressionVotes: 0GitHub stars: 16
- Metabolomics Data Downstream AnalysisUse when you have deposited spatio-molecular matrices (e.g., MORPHnMOL.csvVotes: 0GitHub stars: 16