Claude Skills by HolobiomicsLab

'Use when when you have applied multiple scoring functions (e.g., strain

Use when you have executed batch searches against one or more domain-specific

Use when when you have submitted the same MS/MS spectrum query to multiple

Use when when you have conducted batch MS/MS searches across one or more

Use when when building a unified sequence model (e.

Use when before initiating a release branch workflow for a multi-module

Use when you have mass spectrometry spectral data from multiple instrument

Use when you have mass spectrometry data (LC–MS/MS, ion mobility, DIA)

Use when your R-based Spectra analysis workflow requires a specific mass

Use when when a new file format specification has multiple language implementations

Use when when you have domain-specific functionality (e.g., spectral

Use when you have a mature R analysis pipeline (e.g., using Spectra objects

Use when you have multi-language code implementations (R and MATLAB scripts)

Use when when you have consensus metabolic reconstructions for multiple

Use when you have a pretrained RT-Transformer model checkpoint from a

Use when when you have predicted retention times from a DNN model trained

Use when after completing pretraining and fine-tuning stages when you

Use when you have preprocessed multiomics datasets from distinct biomolecular

Use when when you have two feature matrices from different omics modalities

Use when when you have paired genomics (AntiSMASH BGC annotations) and

Use when you have selected two organisms whose metabolic networks are

Use when you are loading index.html locally in a browser and WebWorker

Use when when you have a Qt5 C++ project (such as Maven GUI or Maven

Use when you have a Windows-only .NET Framework application that must

Use when when releasing a new version of a tool, onboarding to a new

Use when when developing a standalone scientific application that relies

Use when when you have documented pinned package versions for a Python-based

Use when you are designing a new tool for FT-ICR MS analysis (or similar

Use when when cataloging a suite of related bioinformatics tools or web

Use when you have already generated per-sample MS2 fingerprints (count

Use when you have run mass detection and chromatogram building independently

Use when you have detected feature tables from two or more LC-IMS-MS/MS

Use when after feature extraction (MS1 peak picking, MS2 recognition,

Use when when a deep learning pipeline processes mass spectrometry spectra

Use when you have collected feature lists in CSV format from two or more

Use when when preparing augmented training data for a Siamese rescore

Use when when training a Siamese architecture rescore model for MS/MS-based

'Use when when you have a pre-trained model and need to report stable,

Use when when you have obtained raw metabolite abundance data in a format

Use when when you have raw tandem MS metabolomics data in vendor formats

Use when you have executed multiple NPDtools database search pipelines

Use when when you have trained a neural network or regression model to

Use when you have developed a predictive model and need to compare its

Use when after training multiple neural network models via k-fold cross-validation

Use when when building Cox-PH or Cox-nnet survival models from expression

Use when when you have paired microbiome and metabolome count data and

Use when after running k-fold repeated cross-validation on a development

Use when when preparing to train supervised binary classification models

Use when you have paired microbiome (16S rRNA/metagenomic) and metabolome

Use when you have an experimental mass spectrum (query) and a set of