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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Msi Preprocessing Parameter ConfigurationUse when you have raw line-scan MSI data (from Bruker .d/.baf, convertedVotes: 0GitHub stars: 16
- Msi Spectral Data ImportUse when use this skill at the start of any MSI analysis workflow whenVotes: 0GitHub stars: 16
- Msimagingarray Object ManipulationUse when when you have loaded mass spectrometry imaging data into a MSImagingArraysVotes: 0GitHub stars: 16
- Msimagingexperiment Object ValidationUse when after reading an imzML file (continuous or processed format)Votes: 0GitHub stars: 16
- Msimagingexperiment Subset OperationsUse when after peak alignment with peakAlign(), when you have an MSImagingExperimentVotes: 0GitHub stars: 16
- Msms Spectral Database RetrievalUse when when you have a target compound (modified or unmodified) andVotes: 0GitHub stars: 16
- Msms Spectrum Data Structure ManipulationUse when you have raw or downloaded MSMS spectra (from online resourcesVotes: 0GitHub stars: 16
- Msms Spectrum Metadata PreservationUse when removing invalid or malformed entries (e.g., SMILES validation,Votes: 0GitHub stars: 16
- Msms Spectrum Object InstantiationUse when when you have successfully resolved a USI string to extractVotes: 0GitHub stars: 16
- Msp File Format ParsingUse when you have acquired EI or MS2 library files in MSP format (e.g.,Votes: 0GitHub stars: 16
- Msp File Parsing And SerializationUse when you have raw .msp files containing mass spectra records andVotes: 0GitHub stars: 16
- Msp File Parsing And WritingUse when you have one or more .msp spectral library files (NIST format)Votes: 0GitHub stars: 16
- Msp File Parsing Edge Case HandlingUse when you are parsing mass spectrometry spectral library files inVotes: 0GitHub stars: 16
- Msp File ParsingUse when you have a Mass Spectrum Point (MSP) file containing electronVotes: 0GitHub stars: 16
- Msp To Csv ParsingUse when you have a .msp format MS/MS spectrum library (e.g., from MassBankVotes: 0GitHub stars: 16
- Multi Assay Cross Linking ValidationUse when you have statistically significant features from multiple LC-MSVotes: 0GitHub stars: 16
- Multi Assay Data Integration And HarmonizationUse when you have independent LC-MS assays (e.g., positive and negativeVotes: 0GitHub stars: 16
- Multi Backend Plot Generation And BenchmarkingUse when when you have a suite of Sphinx gallery example scripts targetingVotes: 0GitHub stars: 16
- Multi Backend Visualization AbstractionUse when when building a mass spectrometry visualization library thatVotes: 0GitHub stars: 16
- Multi Batch Experimental Design UnderstandingUse when your metabolomics experiment includes samples acquired acrossVotes: 0GitHub stars: 16
- Multi Cell Line Rps CalculationUse when when you have LC-MS normalized intracellular metabolite abundanceVotes: 0GitHub stars: 16
- Multi Charge State Ccs HandlingUse when your TWIM-MS dataset contains ions with multiple charge statesVotes: 0GitHub stars: 16
- Multi Class Label AssignmentUse when you have raw LC-MS metabolomics data from multiple disease groupsVotes: 0GitHub stars: 16
- Multi Class Network AnnotationUse when you have (1) metabolite-disease correlation matrices and proteinVotes: 0GitHub stars: 16
- Multi Component Weighted Ranking AggregationUse when you have completed LC–MS/MS feature detection and annotationVotes: 0GitHub stars: 16
- Multi Criterion Scoring IntegrationUse when you have an LC-HRMS feature table (m/z, retention time, isotopeVotes: 0GitHub stars: 16
- Multi Database Structure QueryingUse when after cleaning and clustering LC-MS features in MS-CleanR, whenVotes: 0GitHub stars: 16
- Multi Dataset Integration Mzrt SpaceUse when you have multiple CSV feature tables from independent metabolomicVotes: 0GitHub stars: 16
- Multi Dimensional Data EncodingUse when you have loaded LC-MS feature tables or peak detection outputVotes: 0GitHub stars: 16
- Multi Dimensional Data Loading And FormattingUse when you have raw or processed mass spectrometry data in HDF5 (.h5)Votes: 0GitHub stars: 16
- Multi Dimensional Sample StratificationUse when you have a parsed sample list with metadata (sample IDs, classificationVotes: 0GitHub stars: 16
- Multi Domain Search Result AggregationUse when you have executed batch searches of MS/MS spectra against multipleVotes: 0GitHub stars: 16
- Multi Format Data IngestionUse when you have raw metabolomics data files in one or more of the supportedVotes: 0GitHub stars: 16
- Multi Group Comparison InterpretationUse when after performing an ANOVA-style multi-group de_design() analysisVotes: 0GitHub stars: 16
- Multi Head Attention Mechanism ApplicationUse when you have embedded sequences of chemical formulae (tokenizedVotes: 0GitHub stars: 16
- Multi Head Attention Mechanism DesignUse when when building a transformer-based model to process mass spectrometryVotes: 0GitHub stars: 16
- Multi Hypothesis Scoring And EnumerationUse when when you have an unknown tandem mass spectrum (MS/MS peaks withVotes: 0GitHub stars: 16
- Multi Inheritance Class HierarchyUse when when you need to support multiple plotting library backendsVotes: 0GitHub stars: 16
- Multi Instrument Data IntegrationUse when you have DIA mass spectrometry raw files from multiple instrumentVotes: 0GitHub stars: 16
- Multi Library Comparative AnalysisUse when you need to evaluate whether a newly released or candidate libraryVotes: 0GitHub stars: 16
- Multi Modal Spectroscopic Data IntegrationUse when you have acquired complementary spectroscopic measurements (NMR,Votes: 0GitHub stars: 16
- Multi Modal Spot Validation And Quality AssessmentUse when after performing spot_align_byknn to map SM spots to ST spots,Votes: 0GitHub stars: 16
- Multi Mode Filter Application High Dimensional DataUse when you have high-dimensional biological data (e.Votes: 0GitHub stars: 16
- Multi Module Joint TrainingUse when when you have a pretrained encoder that captures domain knowledgeVotes: 0GitHub stars: 16
- Multi Omic Data IntegrationUse when you have raw or processed TWIM-MS data with arrival time andVotes: 0GitHub stars: 16
- Multi Omics Data IntegrationUse when when you have matched transcriptomics (RNA-seq read counts),Votes: 0GitHub stars: 16
- Multi Omics Latent Space LearningUse when you have preprocessed and jointly normalized ST and SM dataVotes: 0GitHub stars: 16
- Multi Panel Spectra ComparisonUse when when you need to visually compare two or more spectra (MS1,Votes: 0GitHub stars: 16
- Multi Platform Ms IntegrationUse when you have untargeted metabolomics data from multiple MS instrumentsVotes: 0GitHub stars: 16
- Multi Sample Abundance Pattern DetectionUse when after initial retention-time-based feature grouping (e.Votes: 0GitHub stars: 16