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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Quality Control Summary GenerationUse when after applying one or more mpactr filters (mispicked, group,Votes: 0GitHub stars: 16
- Quality Control Threshold OptimizationUse when when you have extracted a peak feature table (CSV or tabularVotes: 0GitHub stars: 16
- Quality Control Threshold ValidationUse when after executing Formation formatting on processed feature tablesVotes: 0GitHub stars: 16
- Quality Metric Computation From Mass Spectrometry DataUse when you have raw DIA mass spectrometry files (.raw, .d, or .wiffVotes: 0GitHub stars: 16
- Quality Metrics SummarizationUse when after running QC analysis on NMR or MS metabolomic data andVotes: 0GitHub stars: 16
- Quantification Table NormalizationUse when you have raw quantification data (abundance or intensity valuesVotes: 0GitHub stars: 16
- Quantitation Table GenerationUse when you have raw MS data in a supported instrument format (AgilentVotes: 0GitHub stars: 16
- Quantitative Mode Metabolomics ConfigurationUse when when you have metabolomics results from multiple studies reportingVotes: 0GitHub stars: 16
- Quantitative Ms Data PreprocessingUse when you have raw MS intensity tables showing systematic drift duringVotes: 0GitHub stars: 16
- Quantum Chemistry Based Fragmentation PredictionUse when when you have SMILES strings or molecular formulae for N-MeVotes: 0GitHub stars: 16
- Quantum Chemistry Structure PreparationUse when when you have a collection of N-Me derived unsaturated sterolVotes: 0GitHub stars: 16
- Quantum Input File PreparationUse when you have a set of RDKit-generated conformers ranked by ASE-ANIVotes: 0GitHub stars: 16
- Quantum Mechanical Property CalculationUse when when you have interpolated or optimized molecular geometriesVotes: 0GitHub stars: 16
- Quasi Molecular Adduct FilteringUse when after feature clustering has been applied to co-eluting LC-MSVotes: 0GitHub stars: 16
- Query Language Grammar DesignUse when when you need to enable non-programmer mass spectrometry usersVotes: 0GitHub stars: 16
- Query Latency Throughput MeasurementUse when when you have implemented or obtained a spectral library searchVotes: 0GitHub stars: 16
- Query Representation ValidationUse when after parsing a MassQL query string into an abstract syntaxVotes: 0GitHub stars: 16
- Query Result Serialization To CsvUse when after executing a MassQL query against mzML mass spectrometryVotes: 0GitHub stars: 16
- Query Result TabulationUse when after executing MassQL queries against mzML mass spectrometryVotes: 0GitHub stars: 16
- Queued Spectrum Preview GenerationUse when when you have queued one or more spectral processing operationsVotes: 0GitHub stars: 16
- Qvalue Threshold FilteringUse when after loading search result files (e.g., from DIA-NN or OpenSwath)Votes: 0GitHub stars: 16
- R Bioconductor Summarizedexperiment ManipulationUse when when converting raw metabolomics data (tab-delimited text files,Votes: 0GitHub stars: 16
- R Bioconductor Workflow OrchestrationUse when you have untargeted LC/MS metabolomics data from stable isotopeVotes: 0GitHub stars: 16
- R Data Frame AggregationUse when when you have extracted multiple spectral attributes (e.g.,Votes: 0GitHub stars: 16
- R Data Frame TransformationUse when when you have autoQ output containing peak area measurementsVotes: 0GitHub stars: 16
- R Data Object SerializationUse when you have mzPeak files (Parquet-based archives containing massVotes: 0GitHub stars: 16
- R Data Structure ConversionUse when you have preprocessed MSI data in Cardinal format (post-peakBin)Votes: 0GitHub stars: 16
- R Data Structure ManipulationUse when when xcms has produced misaligned feature groups and you needVotes: 0GitHub stars: 16
- R Data Structure ProcessingUse when you have a peak table matrix with NA values that need to beVotes: 0GitHub stars: 16
- R Data Structure SerializationUse when after completing Part 4 (Identification of ISF Features) inVotes: 0GitHub stars: 16
- R Function CallingUse when after AutoTuner has completed peak identification (TIC analysis),Votes: 0GitHub stars: 16
- R Function Workflow ExecutionUse when you have raw lipidomic and metabolomic data files generatedVotes: 0GitHub stars: 16
- R Internal Function InvocationUse when when you need to verify or retrieve package-internal metadataVotes: 0GitHub stars: 16
- R List Object ManipulationUse when you have extracted metadata or spectral information from a ThermoVotes: 0GitHub stars: 16
- R Object Inspection And ValidationUse when after performing assignment operations (assign_ri, assign_smiles)Votes: 0GitHub stars: 16
- R Object Size Measurement And BenchmarkingUse when evaluating alternative implementations of data storage or retrievalVotes: 0GitHub stars: 16
- R Package Api UsageUse when when you have metabolomics data (tab-delimited text or SummarizedExperimentVotes: 0GitHub stars: 16
- R Package Function ExecutionUse when you have raw Bruker NMR spectral data files (1D 1H format) storedVotes: 0GitHub stars: 16
- R Package Function IntegrationUse when you have a published predictive model with known coefficientsVotes: 0GitHub stars: 16
- R Package Installation And Runtime VerificationUse when before running any R function that wraps compiled C# methodsVotes: 0GitHub stars: 16
- R Parallel Backend ConfigurationUse when you have multiple MSP (mass spectrum) library files to readVotes: 0GitHub stars: 16
- R Python Interoperability Via WrapperUse when you have a Spectra object in R and need to apply a specializedVotes: 0GitHub stars: 16
- R S4 Object Accessor UsageUse when you have constructed or received a SummarizedExperiment objectVotes: 0GitHub stars: 16
- R Script Validation And ExecutionUse when when you have obtained an R-based bioinformatic program (suchVotes: 0GitHub stars: 16
- R Statistical ComputingUse when you have a merged and batch-corrected non-targeted LC-MS/MSVotes: 0GitHub stars: 16
- R Statistical Model SerializationUse when after training a customized R statistical or machine learningVotes: 0GitHub stars: 16
- R Workflow ImplementationUse when you have raw mass spectrometry data in mzXML, mzML, or netCDFVotes: 0GitHub stars: 16
- R Workflow Scripting For Analytical ChemistryUse when you have raw CE-MS or LC-MS instrument files (stored as OnDiskMSnExpVotes: 0GitHub stars: 16
- R6 Class Object Mutation TestingUse when when applying a series of mpactr filter functions (filter_mispicked_ions,Votes: 0GitHub stars: 16
- R6 Object Method InvocationUse when when working with large metabolomics peak tables (e.Votes: 0GitHub stars: 16