All authors
Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Retention Index Calibration ApplicationUse when when processing GC-MS data where retention time alone is insufficientVotes: 0GitHub stars: 16
- Retention Index Extraction From Nist DatabaseUse when you have a compiled EI or MS2 library object (from read_libVotes: 0GitHub stars: 16
- Retention Order Prediction RplcUse when when you have a set of small molecules (as SMILES or structures)Votes: 0GitHub stars: 16
- Retention Time Agnostic Spectral AlignmentUse when you have MS2 fragmentation spectra from multiple samples (inVotes: 0GitHub stars: 16
- Retention Time Alignment Across BatchesUse when you have extracted peaks from multiple LC/HRMS batches (n >Votes: 0GitHub stars: 16
- Retention Time Alignment ClusteringUse when you have two or more nontargeted LCMS feature tables from theVotes: 0GitHub stars: 16
- Retention Time Alignment CorrectionUse when when processing a batch of centroided mzML or mzXML LC-MS rawVotes: 0GitHub stars: 16
- Retention Time Alignment EvaluationUse when you have run an NPP tool (XCMS, MZmine 2, etc.) on mzML filesVotes: 0GitHub stars: 16
- Retention Time Alignment Index MappingUse when when processing multiple LC-MS samples with varying scan numbersVotes: 0GitHub stars: 16
- Retention Time Alignment Mapping ApplicationUse when after mass tracks have been aligned across samples into a MassGridVotes: 0GitHub stars: 16
- Retention Time Alignment ScoringUse when after feature m/z grouping and pairwise alignment detectionVotes: 0GitHub stars: 16
- Retention Time Alignment ValidationUse when after sample alignment step in untargeted LC-MS workflows, particularlyVotes: 0GitHub stars: 16
- Retention Time AlignmentUse when after peak detection in untargeted metabolomics when you haveVotes: 0GitHub stars: 16
- Retention Time And Mass Based Sorting'Use when you have raw GC-MS output in CSV format (with columns: Component.RT,Votes: 0GitHub stars: 16
- Retention Time And Mass Sorting Of Chromatographic PeaksUse when you have raw GC-MS output from Agilent Unknowns Analysis (aVotes: 0GitHub stars: 16
- Retention Time And Mz Based AlignmentUse when after peak detection has been completed on individual LC-MSVotes: 0GitHub stars: 16
- Retention Time And Mz Weight TuningUse when after anchor selection and RT mapping spline construction, whenVotes: 0GitHub stars: 16
- Retention Time Based Feature GroupingUse when after chromatographic peak detection on preprocessed LC-MS dataVotes: 0GitHub stars: 16
- Retention Time Based Ion AssociationUse when when processing Data Dependent Acquisition (DDA) raw mass spectrometryVotes: 0GitHub stars: 16
- Retention Time Calibration IntegrationUse when you have LC-MS data from authentic standards run in positiveVotes: 0GitHub stars: 16
- Retention Time Calibration Lowess Regression'Use when after mass track construction and before composite map building,Votes: 0GitHub stars: 16
- Retention Time Calibration Via Lowess RegressionUse when after mass track extraction and alignment across samples, whenVotes: 0GitHub stars: 16
- Retention Time Clustering AlignmentUse when you have extracted feature tables (via MS1 peak picking, MS2Votes: 0GitHub stars: 16
- Retention Time ClusteringUse when you have an XCMS CentWave feature extraction output table containingVotes: 0GitHub stars: 16
- Retention Time Co Elution DetectionUse when after matching mass-to-charge ratios to a compound databaseVotes: 0GitHub stars: 16
- Retention Time Correction And AlignmentUse when you have multiple LC-MS runs with the same set of targets (compounds)Votes: 0GitHub stars: 16
- Retention Time Correlation FilteringUse when you have detected multiple LC-MS features (m/z peaks) acrossVotes: 0GitHub stars: 16
- Retention Time Correlation Similarity ScoringUse when when you have detected multiple features from non-targeted massVotes: 0GitHub stars: 16
- Retention Time Drift DetectionUse when you have LC-MS data processed through XCMS grouping that showsVotes: 0GitHub stars: 16
- Retention Time Drift Time M Z Querying'Use when you have multidimensional MS data converted to MZA HDF5 formatVotes: 0GitHub stars: 16
- Retention Time Extraction From Raw SpectraUse when when you have Thermo Orbitrap .raw files containing known referenceVotes: 0GitHub stars: 16
- Retention Time Feature ClusteringUse when after chromatographic peak detection (findChromPeaks) when youVotes: 0GitHub stars: 16
- Retention Time Feature Distribution AnalysisUse when you have extracted retention times from top MS1 features inVotes: 0GitHub stars: 16
- Retention Time FilteringUse when working with GCIMS datasets where retention time spans a wideVotes: 0GitHub stars: 16
- Retention Time Index CalibrationUse when you have acquired a bottom-up proteomics LC-MS/MS run (e.Votes: 0GitHub stars: 16
- Retention Time Indexed Spectral AggregationUse when you have Thermo Fisher Scientific .raw files from an LC-MS experimentVotes: 0GitHub stars: 16
- Retention Time Intensity Data ExtractionUse when you have xcms-processed LC-MS data with detected misalignedVotes: 0GitHub stars: 16
- Retention Time Intensity ExtractionUse when when you have imported mass spectrometry data in .raw, .d, orVotes: 0GitHub stars: 16
- Retention Time Intensity TabulationUse when when you have a resolved mzML or mzXML spectrum file and needVotes: 0GitHub stars: 16
- Retention Time Mapping Spline FittingUse when after anchor feature pairs (m/z and retention time values) haveVotes: 0GitHub stars: 16
- Retention Time Mass AlignmentUse when you have two independent LC-MS untargeted metabolomic featureVotes: 0GitHub stars: 16
- Retention Time Mass Correspondence ResolutionUse when you have two LC-MS untargeted metabolomic feature tables (eachVotes: 0GitHub stars: 16
- Retention Time Mass Proximity MatchingUse when after sample alignment and grouping of isotopologues and adductsVotes: 0GitHub stars: 16
- Retention Time Mass Tolerance CalibrationUse when you have multiple feature tables (CSV files) from differentVotes: 0GitHub stars: 16
- Retention Time Mz Alignment MatchingUse when you have extracted feature tables (m/z, intensity, retentionVotes: 0GitHub stars: 16
- Retention Time Mz AlignmentUse when processing raw LC/MS data (mzML or mzXML format) from multi-sampleVotes: 0GitHub stars: 16
- Retention Time Mz Coordinate MappingUse when when you have mass-spectrometry data in tabular form (PandasVotes: 0GitHub stars: 16
- Retention Time Mz Feature ExtractionUse when you have LC-HRMS profile-mode data (e.g., netCDF or mzML format)Votes: 0GitHub stars: 16
- Retention Time Mz IndexingUse when when you have parsed .mzML or Thermo .raw LC-MS data and needVotes: 0GitHub stars: 16
- Retention Time Mz Intensity MappingUse when you have processed LC-MS run data (feature table or peak detectionVotes: 0GitHub stars: 16