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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Reference Based Vs Global Coordinate RegistrationUse when you have detected feature tables from multiple LC-IMS-MS/MSVotes: 0GitHub stars: 16
- Reference Compound VerificationUse when after formatting raw mass spectrometry transition data intoVotes: 0GitHub stars: 16
- Reference Database ScreeningUse when after a CNN model has generated predicted molecular embeddingsVotes: 0GitHub stars: 16
- Reference Database Tolerance MappingUse when you have calculated pairwise mass differences from MS peaksVotes: 0GitHub stars: 16
- Reference Dataset Validation For Metabolite IonsUse when after computing expected adduct ions for a metabolite usingVotes: 0GitHub stars: 16
- Reference Feature Combination StrategyUse when when you have isolated, high-confidence reference chromatographicVotes: 0GitHub stars: 16
- Reference Library AlignmentUse when when you have IM-MS lipidomics data with measured CCS valuesVotes: 0GitHub stars: 16
- Reference Peak Matching And AlignmentUse when when you have a processed mass spectrum object (e.g., from BrukerVotes: 0GitHub stars: 16
- Reference Peak Matching And Fallback LogicUse when when performing m/z domain calibration on FT-ICR or high-resolutionVotes: 0GitHub stars: 16
- Reference Peak Matching Retention Time AlignmentUse when you have training LC-HRMS chromatograms (rt × m/z matrix format)Votes: 0GitHub stars: 16
- Reference Prediction Comparison EvaluationUse when you have executed a structure annotation pipeline (like BAM)Votes: 0GitHub stars: 16
- Reference Semantics VerificationUse when when applying sequential filters to a large metabolomics peakVotes: 0GitHub stars: 16
- Regex Capture Group ApplicationUse when when you have PSM files (output from search engines like MaxQuant,Votes: 0GitHub stars: 16
- Regression Metric Computation And ComparisonUse when you have trained two or more regression models (e.g., originalVotes: 0GitHub stars: 16
- Regression Metric Computation Rmse Mae R2'Use when you have model predictions and ground-truth labels for a testVotes: 0GitHub stars: 16
- Regression Model Evaluation Mae MetricsUse when when you have trained a regression model on experimental retentionVotes: 0GitHub stars: 16
- Regression Model Evaluation MetricsUse when after training a deep-learning regression model (e.g., for CCSVotes: 0GitHub stars: 16
- Regression Model Validation QuantificationUse when when you have fitted one or more regression models (linear orVotes: 0GitHub stars: 16
- Regression Performance Metric ComputationUse when after generating collision cross section predictions on a validationVotes: 0GitHub stars: 16
- Relative Abundance PreprocessingUse when when you have raw count tables from 16S rRNA sequencing (microbiome)Votes: 0GitHub stars: 16
- Relative Mass Defect Window FilteringUse when apply this filter when working with MS-DIAL peak lists (featureVotes: 0GitHub stars: 16
- Relative Standard Deviation Calculation Qc ReplicatesUse when you have a peak table from XCMS preprocessing with intensityVotes: 0GitHub stars: 16
- Release Branch Management'Use when you need to validate that a software project''s release branchVotes: 0GitHub stars: 16
- Rendering Speed ProfilingUse when when you have implemented the same visualization (e.g., chromatogram,Votes: 0GitHub stars: 16
- Replicate Consistency AssessmentUse when after NMR or MS data acquisition and preprocessing (phasing,Votes: 0GitHub stars: 16
- Replicate Spectrum Aggregation Sample LevelUse when after frequency-based denoising has been applied to individualVotes: 0GitHub stars: 16
- Replicate Spectrum ComparisonUse when you have multiple MS/MS spectra (replicates) for a single metabolicVotes: 0GitHub stars: 16
- Replicate Spectrum ConcatenationUse when after extracting raw MS/MS spectra from mzML files for individualVotes: 0GitHub stars: 16
- Repository AdministrationUse when you need to validate that a scientific software project's continuousVotes: 0GitHub stars: 16
- Repository Backend DispatchUse when when you have a USI string (e.g., 'mzspec:GNPS:TASK-abc123:scan:1943')Votes: 0GitHub stars: 16
- Repository Cloning And InitializationUse when you have a GitHub repository URL, a documented Python versionVotes: 0GitHub stars: 16
- Repository Cloning And SetupUse when when you need to deploy a containerized scientific tool (e.g.,Votes: 0GitHub stars: 16
- Repository Cloning And Structure NavigationUse when when starting a fresh ENPKG installation, you have a GitHubVotes: 0GitHub stars: 16
- Repository Code IntegrationUse when you have identified a published method (e.g., MIST-CF for chemicalVotes: 0GitHub stars: 16
- Repository Environment SetupUse when when you have received a GitHub repository URL for a computationalVotes: 0GitHub stars: 16
- Repository History AnalysisUse when when you need to understand how a complex feature or architecturalVotes: 0GitHub stars: 16
- Repository Source Code SetupUse when you need to validate that a published software tool (e.g., MassQL)Votes: 0GitHub stars: 16
- Representation Collapse PreventionUse when training a contrastive learning model on ion image data (massVotes: 0GitHub stars: 16
- Representation Vector Dimensionality ReductionUse when after obtaining 512-dimensional representation vectors fromVotes: 0GitHub stars: 16
- Reproducibility Signal Detection NonparametricUse when when you have high-dimensional replicate experimental data (e.g.,Votes: 0GitHub stars: 16
- Reproducibility Statistic Computation Rank BasedUse when you have high-dimensional replicate experiment data (metabolomics,Votes: 0GitHub stars: 16
- Rescore Column StandardizationUse when after running FIDDLE v2.0.0 inference on MS/MS spectra and obtainingVotes: 0GitHub stars: 16
- Rescore Training Data AugmentationUse when when you have TCN-predicted candidate formulas with ranked scoresVotes: 0GitHub stars: 16
- Residue Position Mapping To Spectrum PeaksUse when when you have an MS2 spectrum (FT2 scan or mzML) with observedVotes: 0GitHub stars: 16
- Resnet Architecture Modification For Dimensionality ControlUse when your task requires a pretrained convolutional encoder (ResNet18)Votes: 0GitHub stars: 16
- Resolution Effect Correction Unlabeled SamplesUse when when you have paired LC-MS data from both labeled (isotope-tracerVotes: 0GitHub stars: 16
- Resolver Url ConstructionUse when when you have a USI string (comprising dataset identifier, spectrumVotes: 0GitHub stars: 16
- Restful Api Endpoint InvocationUse when you have NMR peak data (1H and 13C chemical shift values) andVotes: 0GitHub stars: 16
- Retention Index Assignment And FilteringUse when after combining multiple EI or MS2 mass spectral libraries andVotes: 0GitHub stars: 16
- Retention Index Calibration And AlignmentUse when processing raw GC-MS data in NetCDF format where peaks haveVotes: 0GitHub stars: 16