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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Retention Time Normalization And ScoringUse when you have XCMS-aligned feature tables with retention time valuesVotes: 0GitHub stars: 16
- Retention Time Peak FlaggingUse when after applying peak detection algorithms to identify local maximaVotes: 0GitHub stars: 16
- Retention Time Peak MatchingUse when after drift correction and quality flagging, when you have aVotes: 0GitHub stars: 16
- Retention Time Prediction ChromatographyUse when you have a new chromatographic dataset with molecular structuresVotes: 0GitHub stars: 16
- Retention Time Prediction From StructuresUse when you have molecular structures (SMILES or SDF format) for whichVotes: 0GitHub stars: 16
- Retention Time Prediction ModelingUse when you have a set of small-molecule compounds (e.g., from MS/MSVotes: 0GitHub stars: 16
- Retention Time Prediction OptimizationUse when when you have a retention-time dataset (e.g., SMRT or Eawag_XBridgeC18_364)Votes: 0GitHub stars: 16
- Retention Time Prediction ScoringUse when you have a list of candidate metabolites for an unknown compoundVotes: 0GitHub stars: 16
- Retention Time Prediction ValidationUse when after training a GNN-RT model on preprocessed molecular graphVotes: 0GitHub stars: 16
- Retention Time PredictionUse when you have MS1-formatted mass spectrometry files from a liquidVotes: 0GitHub stars: 16
- Retention Time Projection Across Chromatographic MethodsUse when when you have retention times measured on one chromatographicVotes: 0GitHub stars: 16
- Retention Time Range FilteringUse when you have raw IM-MS data (Agilent MassHunter .d or UIMF format)Votes: 0GitHub stars: 16
- Retention Time Regression Output SpecificationUse when after initializing and executing a forward pass through a dual-branchVotes: 0GitHub stars: 16
- Retention Time Scan MappingUse when when you have loaded an LC-MS spectrum file (mzML, mzXML, orVotes: 0GitHub stars: 16
- Retention Time Window ClusteringUse when after filtering LC-MS features by statistical significance (e.g.,Votes: 0GitHub stars: 16
- Retention Time Window ExtractionUse when you have loaded sqMass files containing pre-extracted transitionVotes: 0GitHub stars: 16
- Retention Time Window FilteringUse when you have mzML/mzXML chromatogram files from Thermo, Waters,Votes: 0GitHub stars: 16
- Retention Time Window Tolerance Checking'Use when you have acquired LC-MS data and need to verify run qualityVotes: 0GitHub stars: 16
- Retention Time WindowingUse when you have a complete TIC (total ion current) table indexed byVotes: 0GitHub stars: 16
- Retrieval Metric Hit K CalculationUse when when you have generated embeddings for query and reference MS/MSVotes: 0GitHub stars: 16
- Ribosomally Synthesized Peptide IdentificationUse when you have LC-MS/MS spectral data (in MGF, mzXML, mzML, or mzDataVotes: 0GitHub stars: 16
- Richness Index ComputationUse when you have a normalized peak-abundance matrix from FT-ICR MS dataVotes: 0GitHub stars: 16
- Ripp Peptide Identification From SpectraUse when you have LC-MS/MS spectra (MGF, mzXML, mzML, or mzData format)Votes: 0GitHub stars: 16
- Ripp Peptide Sequence Database ConstructionUse when when you have genomic sequences (assembled contigs or antiSMASH/BOAVotes: 0GitHub stars: 16
- Rippp Candidate Structure GenerationUse when after identifying precursor peptides from genome assembliesVotes: 0GitHub stars: 16
- Rippp Structure Database Matching'Use when you have: (1) tandem MS/MS spectra in MGF, mzXML, mzML, orVotes: 0GitHub stars: 16
- Robust Statistical Spread QuantificationUse when after drift correction of LC-MS peak intensity data, when youVotes: 0GitHub stars: 16
- Roc Curve Auc Metric EvaluationUse when after training a NeatMS CNN model on labeled MS1 peaks and generatingVotes: 0GitHub stars: 16
- Roi Definition And ExtractionUse when when you have loaded imzML MSI data into napari and need toVotes: 0GitHub stars: 16
- Roi Detection Mass SpectrometryUse when you have raw or converted mass spectrometry data (CE-MS or LC-MSVotes: 0GitHub stars: 16
- Roi Tensor Formatting For Deep LearningUse when after segmenting raw profile LC-MS data into candidate ROIsVotes: 0GitHub stars: 16
- Root Developmental Tissue ProfilingUse when you have CDF-format mass spectrometry imaging files from plantVotes: 0GitHub stars: 16
- Root Mean Squared Error CalculationUse when when you have paired predictions and ground-truth structuralVotes: 0GitHub stars: 16
- Root Mean Squared Error Computation By BinUse when when evaluating a regression or similarity prediction modelVotes: 0GitHub stars: 16
- Root Mean Squared Error Regression EvaluationUse when you have a trained regression model (e.g., a neural networkVotes: 0GitHub stars: 16
- Round Trip Data Integrity VerificationUse when you have implemented or are validating a reader/writer libraryVotes: 0GitHub stars: 16
- Routing Module Testing And ValidationUse when when you have implemented conditional routing logic in the GNPS_MASSTVotes: 0GitHub stars: 16
- Rsd Threshold Parameter OptimizationUse when when preparing XCMS peak tables for quality classification andVotes: 0GitHub stars: 16
- Rt Transformation Parameter CalculationUse when you have centroided mzML or mzXML LC-MS files from a singleVotes: 0GitHub stars: 16
- Run Order Dependency ModelingUse when your feature table includes QC (quality control) sample replicatesVotes: 0GitHub stars: 16
- Runtime Comparison AnalysisUse when when a new version or variant of a tool claims performance improvementsVotes: 0GitHub stars: 16
- Runtime Performance BenchmarkingUse when when you have implemented or adopted a new clustering or analysisVotes: 0GitHub stars: 16
- Runtime Performance Profiling'Use when when you need to empirically validate that one mass spectrometryVotes: 0GitHub stars: 16
- Rust Build System ExecutionUse when you have obtained a Rust source repository (e.g., mzpeak_prototyping)Votes: 0GitHub stars: 16
- Rust Library Compilation And TestingUse when when you have access to Rust source code in a repository withVotes: 0GitHub stars: 16
- S4 Class Definition And InheritanceUse when you are designing a new backend or data container that mustVotes: 0GitHub stars: 16
- S4 Class Definition And Slot Management'Use when you are extending the MsBackend virtual class to create a newVotes: 0GitHub stars: 16
- S4 Class Extension DevelopmentUse when you need to create a new backend for the Spectra package thatVotes: 0GitHub stars: 16
- S4 Class Extension For Backend ImplementationUse when you are building a new data representation or storage strategyVotes: 0GitHub stars: 16
- S4 Class Method InspectionUse when you need to verify that an S4 replacement method (e.g., `mz<-`)Votes: 0GitHub stars: 16