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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Search Result Integration With Raw Mass Spectrometry DataUse when when you have completed a DIA-MS proteomics search (e.Votes: 0GitHub stars: 16
- Search Result Visualization Across DomainsUse when you have executed batch searches of MS/MS spectra against multipleVotes: 0GitHub stars: 16
- Search Results Filtering And ParsingUse when you have loaded DIA mass spectrometry search results containingVotes: 0GitHub stars: 16
- Search Results Loader IntegrationUse when you have search result files from one or more DIA-MS analysisVotes: 0GitHub stars: 16
- Selectivity Metric Computation ChromatographicUse when after peak detection on composite mass tracks when you needVotes: 0GitHub stars: 16
- Semantic Metabolite RankingUse when you have an unknown metabolite with unknown mass spectrum andVotes: 0GitHub stars: 16
- Semantic Role Assignment For Mass Spectrometry DataUse when you have uploaded a delimited data file (comma-, semicolon-,Votes: 0GitHub stars: 16
- Semantic Version Parsing ComparisonUse when before executing a bioinformatics pipeline that depends on multipleVotes: 0GitHub stars: 16
- Sensitivity Specificity Tradeoff AnalysisUse when you have a trained neural network model and a labelled validationVotes: 0GitHub stars: 16
- Sensitivity Threshold Stability Assessment'Use when you have labeled MS/MS spectra from replicate measurementsVotes: 0GitHub stars: 16
- Separation Efficiency Calculation From Retention TimesUse when you have extracted retention times from MS1 spectra for topVotes: 0GitHub stars: 16
- Separation Metric NormalizationUse when you have extracted retention times from top MS1 features acrossVotes: 0GitHub stars: 16
- Separation Technique Workflow AlignmentUse when when evaluating whether an MS data processing platform (suchVotes: 0GitHub stars: 16
- Sequence To Feature MappingUse when when you have a list of polypeptide sequences (plain text, CSV,Votes: 0GitHub stars: 16
- Sequential And Random Access Dual Mode SupportUse when when parsing mzML or other blockwise-structured scientific dataVotes: 0GitHub stars: 16
- Sequential And Random Access File Interface PatternsUse when when you need to support custom data storage backends (e.g.,Votes: 0GitHub stars: 16
- Sequential Tool Integration And Data RoutingUse when when you have raw LC-HRMS metabolomics data in .mzML or .Votes: 0GitHub stars: 16
- Session Object SerializationUse when after you have processed raw LC-MS/MS spectral data throughVotes: 0GitHub stars: 16
- Set Activity Prioritization RankingUse when after computing activity scores for a collection of metaboliteVotes: 0GitHub stars: 16
- Seurat Assay Metadata ExtractionUse when you have a SpaMTP Seurat object with a 'Spatial' assay containingVotes: 0GitHub stars: 16
- Shell Scripting For Program DiscoveryUse when a scientific application (such as QCxMS2) requires multipleVotes: 0GitHub stars: 16
- Shifted Dot Product ScoringUse when matching query mass spectra to a spectral library in the presenceVotes: 0GitHub stars: 16
- Shiny App InitializationUse when you have developed an R-based workflow (e.g., data processing,Votes: 0GitHub stars: 16
- Siamese Architecture Module IntegrationUse when when refactoring a mass-spectrometry formula-prediction codebaseVotes: 0GitHub stars: 16
- Siamese Architecture ScoringUse when after a TCN-based formula prediction model has generated initialVotes: 0GitHub stars: 16
- Siamese Network Architecture ModificationUse when when you need to reduce overfitting in a Siamese neural networkVotes: 0GitHub stars: 16
- Siamese Network Embedding GenerationUse when you have preprocessed MS/MS spectra binned into 10,000 equally-sizedVotes: 0GitHub stars: 16
- Siamese Network Inference Spectrum PairsUse when you have a collection of preprocessed tandem mass spectra (binnedVotes: 0GitHub stars: 16
- Siamese Network InferenceUse when you have a collection of cleaned MS/MS spectra (in formats likeVotes: 0GitHub stars: 16
- Siamese Neural Network Architecture DesignUse when when you have pairs of mass spectrometry spectra and need toVotes: 0GitHub stars: 16
- Signal Acquisition Error QuantificationUse when you have processed the same GC–MS dataset (m/z vs retentionVotes: 0GitHub stars: 16
- Signal Anomaly Detection ChromatographyUse when you have raw total ion current (TIC) traces extracted from massVotes: 0GitHub stars: 16
- Signal Apodization ConfigurationUse when when processing raw Bruker Solarix transient files (.d format)Votes: 0GitHub stars: 16
- Signal Intensity NormalizationUse when after loading raw LC-MS data from multiple disease groups whenVotes: 0GitHub stars: 16
- Signal Noise Ratio Improvement ValidationUse when after executing multidimensional smoothing, spike removal, orVotes: 0GitHub stars: 16
- Signal Noise Trade Off Evaluation'Use when after generating consensus spectra with fragment recurrenceVotes: 0GitHub stars: 16
- Signal Preprocessing Chain Normalization Smoothing BaselineUse when apply this preprocessing chain when you have loaded raw or continuousVotes: 0GitHub stars: 16
- Signal Processing Prominence FilteringUse when when you have a 1D intensity array from a mass spectrum (m/zVotes: 0GitHub stars: 16
- Signal Quality AssessmentUse when you have imported raw MSI spectral data in imzML format andVotes: 0GitHub stars: 16
- Signal Quality Enhancement Low Abundance IonsUse when you observe jagged or noisy peak profiles in low-abundance ionsVotes: 0GitHub stars: 16
- Signal Residual DeconvolutionUse when analyzing 1D signal arrays (e.g., extracted ion chromatograms,Votes: 0GitHub stars: 16
- Signal Smoothing PreprocessingUse when when working with raw LC-HRMS profile-mode data containing noisyVotes: 0GitHub stars: 16
- Signal To Noise Filtering For Peak CandidatesUse when immediately after peak detection in the IDSL.IPA workflow, whenVotes: 0GitHub stars: 16
- Signal To Noise Ratio AssessmentUse when when preparing a 1D 1H NMR spectral peak list for input to theVotes: 0GitHub stars: 16
- Signal To Noise Ratio Calculation PeaksUse when after elution peaks have been detected on composite mass tracksVotes: 0GitHub stars: 16
- Signal To Noise Ratio ComputationUse when after peak detection in nontargeted LC-MS workflows when youVotes: 0GitHub stars: 16
- Signal Trend Assessment Across InjectionsUse when you have QCpool (pooled quality control) samples measured atVotes: 0GitHub stars: 16
- Silhouette Analysis Threshold OptimizationUse when when you have a pre-computed hierarchical dendrogram from structuralVotes: 0GitHub stars: 16
- Similarity Matrix Generation And StorageUse when when you have cleaned and filtered mass spectrometry spectralVotes: 0GitHub stars: 16
- Similarity Matrix GenerationUse when you have a collection of cleaned spectra in supported formatsVotes: 0GitHub stars: 16