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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Source Code Analysis For Algorithm ExtractionUse when when you need to reverse-engineer or formally document the computationalVotes: 0GitHub stars: 16
- Source Code Inspection For Preprocessing StepsUse when when you need to verify that a specific data transformationVotes: 0GitHub stars: 16
- Sparse Distance Matrix ConstructionUse when you have a large collection of MS/MS spectra (hundreds of thousandsVotes: 0GitHub stars: 16
- Sparse Distance Matrix InterpretationUse when you have computed a sparse pairwise distance matrix from nearestVotes: 0GitHub stars: 16
- Sparse Feature Vector HandlingUse when when you have tandem mass spectra (mz/intensity pairs with precursorVotes: 0GitHub stars: 16
- Sparse Matrix ComputationUse when clustering large collections of high-resolution MS/MS spectraVotes: 0GitHub stars: 16
- Sparse Vs Dense Vector Format SelectionUse when when converting high-resolution tandem mass spectra to vectorsVotes: 0GitHub stars: 16
- Spatial Coordinate Mapping MsiUse when after loading and preprocessing a Cardinal MSImagingExperimentVotes: 0GitHub stars: 16
- Spatial Coordinate MappingUse when after LC-MS feature detection, alignment, quantification, andVotes: 0GitHub stars: 16
- Spatial Coordinate Metadata ExtractionUse when you have raw imzML files (paired with .ibd binary data) fromVotes: 0GitHub stars: 16
- Spatial Coordinate Registration Across ModalitiesUse when when you have preprocessed spatial transcriptomics (ST) andVotes: 0GitHub stars: 16
- Spatial Correlation Analysis In Imaging Mass SpectrometryUse when after annotating ion pairs with known adducts (using adductMatchVotes: 0GitHub stars: 16
- Spatial Correlation Filtering In MsiUse when after identifying candidate parent–adduct mass-difference pairsVotes: 0GitHub stars: 16
- Spatial Distribution Pattern AnalysisUse when when you have loaded MSI peak data with associated m/z valuesVotes: 0GitHub stars: 16
- Spatial Feature EmbeddingUse when when analyzing imaging mass spectrometry datasets where youVotes: 0GitHub stars: 16
- Spatial Filtering Ion ImagesUse when preparing raw ion image data from mass spectrometry imagingVotes: 0GitHub stars: 16
- Spatial Metabolomics Feature AnnotationUse when your spatial metabolomics dataset contains raw m/z featuresVotes: 0GitHub stars: 16
- Spatial Metabolomics IntegrationUse when when you have paired spatial metabolomics and spatial transcriptomicsVotes: 0GitHub stars: 16
- Spatial Overlap Analysis ImagingUse when when annotating matrix-related peaks in MSI datasets where candidateVotes: 0GitHub stars: 16
- Spatial Pixel Coordinate AlignmentUse when you have mzML files from a mass spectrometry imaging (MSI) experimentVotes: 0GitHub stars: 16
- Spatial Segmentation Shrunken CentroidsUse when apply SSC when you have preprocessed and normalized MS imagingVotes: 0GitHub stars: 16
- Spatial Spectral Array ProcessingUse when you have preprocessed MSImagingArrays data (after normalization,Votes: 0GitHub stars: 16
- Spatial Spot Coordinate RegistrationUse when when you have paired spatial transcriptome and metabolome datasetsVotes: 0GitHub stars: 16
- Spatial Transcriptome Metabolome CoregistrationUse when you have paired spatial transcriptome and metabolome datasetsVotes: 0GitHub stars: 16
- Spatial Transcriptomics IntegrationUse when you have paired spatial transcriptomics and spatial metabolomicsVotes: 0GitHub stars: 16
- Spatio Molecular Matrix ProcessingUse when you have deposited SpaceM spatio-molecular matrices (MORPHnMOL.Votes: 0GitHub stars: 16
- Spearman Correlation Computation'Use when : (1) you have metabolomic data (NMR or MS-derived) and a continuousVotes: 0GitHub stars: 16
- Spec2vec Model Loading And InferenceUse when you have discovered Mass2Motifs or other fragmentation patternVotes: 0GitHub stars: 16
- Spec2vec Similarity ScoringUse when after discovering Mass2Motifs via LDA on preprocessed MS/MSVotes: 0GitHub stars: 16
- Species Authentication Classification EvaluationUse when when you have high-throughput mass spectrometry data (DI-MS,Votes: 0GitHub stars: 16
- Species Candidate Ranking From Spectral AlignmentUse when you have an unknown sample spectrum (m/z peaks and intensitiesVotes: 0GitHub stars: 16
- Spectra Annotation Parsing And PairingUse when when loading MS/MS spectra from MGF files for FIDDLE model trainingVotes: 0GitHub stars: 16
- Spectra Data Extraction And SubsettingUse when when you need to extract m/z and intensity peak values fromVotes: 0GitHub stars: 16
- Spectra Data Representation BackendsUse when you are creating a new backend to expose MS data (m/z, intensity,Votes: 0GitHub stars: 16
- Spectra Mgf Format LoadingUse when when you have downloaded a GNPS molecular networking archiveVotes: 0GitHub stars: 16
- Spectra Object Instantiation And ManipulationUse when you have mass spectrometry spectral data (m/z and intensityVotes: 0GitHub stars: 16
- Spectra Object Manipulation RUse when when you have extracted and concatenated MS/MS spectra fromVotes: 0GitHub stars: 16
- Spectra Object Serialization DeserializationUse when you have Spectra objects in an R environment and need to applyVotes: 0GitHub stars: 16
- Spectra To Structure ElucidationUse when you have one or more spectroscopic datasets (IR, Raman, UV-Vis,Votes: 0GitHub stars: 16
- Spectra Variable And Peak Data StorageUse when when building a new mass spectrometry data backend for the SpectraVotes: 0GitHub stars: 16
- Spectra Variable Initialization StrategiesUse when when designing or configuring an MsBackend subclass (e.Votes: 0GitHub stars: 16
- Spectra Variable Metadata HandlingUse when when designing a new MsBackend subclass or extending an existingVotes: 0GitHub stars: 16
- Spectral Adduct Ionmode ValidationUse when when processing raw or aggregated mass spectra datasets (fromVotes: 0GitHub stars: 16
- Spectral Alignment OptimizationUse when when you have two MS/MS fragmentation spectra (with precursorVotes: 0GitHub stars: 16
- Spectral Alignment ScoringUse when you have paired MS/MS spectra (known compound and its structuralVotes: 0GitHub stars: 16
- Spectral Annotation And Overlay VisualizationUse when after correlation testing has validated putative parent–adductVotes: 0GitHub stars: 16
- Spectral Annotation Filtering By Similarity MetricsUse when after running GNPS molecular networking, SIRIUS compound identification,Votes: 0GitHub stars: 16
- Spectral Annotation Recall Precision QuantificationUse when you have run two or more annotation pipelines on the same MS/MSVotes: 0GitHub stars: 16
- Spectral Array Extraction And ReconstructionUse when your input is an mzPeak archive (ZIP of Parquet files) and youVotes: 0GitHub stars: 16
- Spectral Artifact Identification In Tandem MsUse when you have a raw or preprocessed peak table from tandem MS/MSVotes: 0GitHub stars: 16