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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Spectral Library Annotation InterpretationUse when you have received chemical annotations from GNPS spectral libraryVotes: 0GitHub stars: 16
- Spectral Library Annotation MatchingUse when when you have downloaded a GNPS archive (GNPS1 or GNPS2 workflows)Votes: 0GitHub stars: 16
- Spectral Library Candidate RankingUse when after MS2Deepscore has selected the top 2000 candidate spectraVotes: 0GitHub stars: 16
- Spectral Library Compilation And MergingUse when you have multiple mass spectral library files in different formatsVotes: 0GitHub stars: 16
- Spectral Library Data ModelingUse when when migrating an existing file-based spectral library (storedVotes: 0GitHub stars: 16
- Spectral Library Database QueryingUse when you have one or more MS/MS query spectra (in mzML, mgf, msp,Votes: 0GitHub stars: 16
- Spectral Library Entry GenerationUse when you have an experimental or public MS/MS spectrum (e.g., fromVotes: 0GitHub stars: 16
- Spectral Library Export And FormattingUse when after theoretical spectra have been generated for lipid–adductVotes: 0GitHub stars: 16
- Spectral Library Format ConversionUse when when you have mass spectral libraries from multiple sourcesVotes: 0GitHub stars: 16
- Spectral Library IndexingUse when you have large spectral libraries (thousands to millions ofVotes: 0GitHub stars: 16
- Spectral Library Integration WorkflowUse when when you have experimental UHPLC-HRMS/MS data targeting lipidVotes: 0GitHub stars: 16
- Spectral Library Match AssignmentUse when you have a set of candidate molecular structures from in silicoVotes: 0GitHub stars: 16
- Spectral Library Match Classification'Use when when you have run MS2Query on query MS/MS spectra and obtainedVotes: 0GitHub stars: 16
- Spectral Library Matching And M Z Peak RankingUse when you have raw GC-MS output in CSV format (with Component.RT,Votes: 0GitHub stars: 16
- Spectral Library Matching And RankingUse when when you have discovered Mass2Motifs from MS2LDA topic modelingVotes: 0GitHub stars: 16
- Spectral Library Matching And ScoringUse when when you have extracted a mean or ROI spectrum from MSI dataVotes: 0GitHub stars: 16
- Spectral Library Matching AnnotationUse when you have MS2 spectral data (precursor m/z, retention time, andVotes: 0GitHub stars: 16
- Spectral Library Matching EvaluationUse when you have a trained spectral embedding model (e.g., MSBERT, Spec2Vec)Votes: 0GitHub stars: 16
- Spectral Library Matching GnpsUse when you have MS2 product-ion spectra in open formats (.mzML or .mzXML)Votes: 0GitHub stars: 16
- Spectral Library Matching RippUse when you have tandem mass spectrometry data (LC-MS/MS in MGF, mzXML,Votes: 0GitHub stars: 16
- Spectral Library Matching ValidationUse when you have GC-MS data preprocessed into a structured spread formatVotes: 0GitHub stars: 16
- Spectral Library Matching With Cosine SimilarityUse when you have a query spectrum and a reduced candidate set of libraryVotes: 0GitHub stars: 16
- Spectral Library Matching With TaxonomyUse when you have MS/MS spectra (.mgf) and candidate metabolite annotationsVotes: 0GitHub stars: 16
- Spectral Library Merging And DeduplicationUse when when building a comprehensive reference spectral library forVotes: 0GitHub stars: 16
- Spectral Library Metadata AssignmentUse when you have a compiled EI or MS2 library object (read from MSPVotes: 0GitHub stars: 16
- Spectral Library Metadata ReorganizationUse when when ingesting mass spectral libraries (EI or MS2) where SMILESVotes: 0GitHub stars: 16
- Spectral Library Molecular NetworkingUse when you have deconvolved GC-MS spectra (from overlapping chromatographicVotes: 0GitHub stars: 16
- Spectral Library Msp SerializationUse when after generating in-memory lipid spectra (with m/z, intensity,Votes: 0GitHub stars: 16
- Spectral Library Parallel IngestionUse when you have multiple MSP or spectral library files (e.g., one perVotes: 0GitHub stars: 16
- Spectral Library Polarity SeparationUse when you have loaded an MS2 library (from NIST, GNPS, or other sourcesVotes: 0GitHub stars: 16
- Spectral Library Query Reference PairingUse when when evaluating a trained spectral embedding model on publiclyVotes: 0GitHub stars: 16
- Spectral Library Record StructuringUse when you have extracted MS1 and MS2 scans (in mzML/mzXML format)Votes: 0GitHub stars: 16
- Spectral Library Schema ValidationUse when after harmonizing MS/MS spectra and metadata fields (compoundVotes: 0GitHub stars: 16
- Spectral Library Similarity MatchingUse when you have an unknown experimental mass spectrum (e.g., from liquidVotes: 0GitHub stars: 16
- Spectral Match InterpretationUse when you have obtained search results from one or more domain-specificVotes: 0GitHub stars: 16
- Spectral Match Result ConsolidationUse when you have executed batch searches of MS/MS spectra against multipleVotes: 0GitHub stars: 16
- Spectral Match Score Interpretation'Use when when you have GC-MS output with Match.Factor values or structuralVotes: 0GitHub stars: 16
- Spectral Match Scoring Algorithm DevelopmentUse when when building or extending MS/MS library search tools that mustVotes: 0GitHub stars: 16
- Spectral Match Threshold ApplicationUse when after running spectral matching (e.g., GNPS library search,Votes: 0GitHub stars: 16
- Spectral Metadata Enrichment Via ApiUse when you have .msp spectrum files with minimal metadata (e.g., onlyVotes: 0GitHub stars: 16
- Spectral Metadata EnrichmentUse when you have a .msp spectral library file with sparse or incompleteVotes: 0GitHub stars: 16
- Spectral Metadata ExtractionUse when after loading an MSP spectral library file into memory usingVotes: 0GitHub stars: 16
- Spectral Metadata GroupingUse when processing a mass spectrometry dataset (in FragHub JSON formatVotes: 0GitHub stars: 16
- Spectral Metadata IntegrationUse when after isotopologue and adduct grouping has been completed andVotes: 0GitHub stars: 16
- Spectral Metadata Schema DesignUse when you are implementing a file parser or data ingestion moduleVotes: 0GitHub stars: 16
- Spectral Metadata StandardizationUse when you have mass spectrometry spectra stored across multiple, disparateVotes: 0GitHub stars: 16
- Spectral Metadata ValidationUse when processing heterogeneous mass spectral datasets from multipleVotes: 0GitHub stars: 16
- Spectral Mixture DeconvolutionUse when you have an NMR spectrum of a mixture sample and a library ofVotes: 0GitHub stars: 16
- Spectral Modality PreprocessingUse when you have downloaded raw spectroscopic data files (NMR, HSQC,Votes: 0GitHub stars: 16
- Spectral Molecular Embedding AlignmentUse when you have MS/MS spectra in MGF or similar format and a referenceVotes: 0GitHub stars: 16