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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Spectral Molecular Family LinkingUse when when you have pre-processed genomic data (GCFs from AntiSMASH/BigScapeVotes: 0GitHub stars: 16
- Spectral Motif Inference And ExtractionUse when you have preprocessed MS/MS spectral data (converted to bag-of-fragmentsVotes: 0GitHub stars: 16
- Spectral Mz Range FilteringUse when you have loaded an MsmsSpectrum object from a proteomics orVotes: 0GitHub stars: 16
- Spectral Mz Window FilteringUse when when you have resolved mzML or mzXML spectrum files and needVotes: 0GitHub stars: 16
- Spectral Network Propagation AnalysisUse when after running MetaMiner's Dereplicator stage to identify someVotes: 0GitHub stars: 16
- Spectral Neutral Loss TransformationUse when when comparing two or more MSMS spectra and you need to emphasizeVotes: 0GitHub stars: 16
- Spectral Noise ClassificationUse when you have MS/MS spectra contaminated with noise ions and needVotes: 0GitHub stars: 16
- Spectral Noise Filtering And Artifact RemovalUse when you have raw MS/MS spectra in supported formats (.mgf, .mzML,Votes: 0GitHub stars: 16
- Spectral Noise Filtering And Quality ControlUse when you have raw MS/MS spectra in multiple formats (.mgf, .msp,Votes: 0GitHub stars: 16
- Spectral Noise Filtering Dynamic PeakUse when use this skill after normalizing, smoothing, and baseline-reducingVotes: 0GitHub stars: 16
- Spectral Noise Filtering PreprocessingUse when you have raw MS/MS spectral data and plan to calculate spectralVotes: 0GitHub stars: 16
- Spectral Noise FilteringUse when immediately after extracting ion chromatograms (EICs) by binningVotes: 0GitHub stars: 16
- Spectral Noise Peak FilteringUse when when working with raw or partially processed tandem mass spectrometryVotes: 0GitHub stars: 16
- Spectral Noise Reduction MsiUse when you have imported raw MSI spectral data in imzML format andVotes: 0GitHub stars: 16
- Spectral Noise Synthesis Poisson DistributionUse when when you have clean, baseline MS/MS spectra and need to createVotes: 0GitHub stars: 16
- Spectral Output FormattingUse when after generating tandem mass spectrum predictions from a neuralVotes: 0GitHub stars: 16
- Spectral Overlay Rendering Multi SampleUse when when you have aligned peak-alignment data from a preceding molecularVotes: 0GitHub stars: 16
- Spectral Overview Representation GenerationUse when you have processed LC-MS/MS spectral data (as a .mgf file withVotes: 0GitHub stars: 16
- Spectral Peak Alignment Across PixelsUse when after peak picking across individual spectra in an MSImagingExperiment,Votes: 0GitHub stars: 16
- Spectral Peak Alignment With Mass OffsetUse when when comparing two MS/MS spectra where the precursor m/z valuesVotes: 0GitHub stars: 16
- Spectral Peak Annotation ProformaUse when you have an annotated or raw tandem mass spectrometry spectrumVotes: 0GitHub stars: 16
- Spectral Peak Annotation Using ProformaUse when you have a tandem mass spectrum with observed m/z peaks andVotes: 0GitHub stars: 16
- Spectral Peak Binning And VectorizationUse when you have raw MS/MS spectra with variable numbers of peaks atVotes: 0GitHub stars: 16
- Spectral Peak Binning PreprocessingUse when when you have raw high-resolution tandem mass spectra (mzML,Votes: 0GitHub stars: 16
- Spectral Peak Clustering Gc ImsUse when after peak detection on individual GC-IMS samples, when youVotes: 0GitHub stars: 16
- Spectral Peak Data ExtractionUse when when you need to retrieve m/z–intensity pairs from a MsBackend-backedVotes: 0GitHub stars: 16
- Spectral Peak Data Validation And ParsingUse when when you have received POST requests containing peaks data asVotes: 0GitHub stars: 16
- Spectral Peak DeconvolutionUse when you have a raw 1D NMR spectrum (FID or processed format) fromVotes: 0GitHub stars: 16
- Spectral Peak Detection And AlignmentUse when after noise filtering and baseline correction have been appliedVotes: 0GitHub stars: 16
- Spectral Peak Detection And DeconvolutionUse when you have raw LC-MS data in mzML or mzXML format and need toVotes: 0GitHub stars: 16
- Spectral Peak Detection And PickingUse when you have raw INADEQUATE NMR spectra files and need to transitionVotes: 0GitHub stars: 16
- Spectral Peak Detection Composite MapUse when when you have aligned mass tracks (extracted ion chromatograms)Votes: 0GitHub stars: 16
- Spectral Peak Detection Local MaximaUse when you have a 1D intensity array (e.g., a single MS1 or MS2 spectrumVotes: 0GitHub stars: 16
- Spectral Peak Embedding EncodingUse when when you have variable-length MS/MS peak lists (m/z and intensityVotes: 0GitHub stars: 16
- Spectral Peak Feature HashingUse when when you have a large collection of query high-resolution massVotes: 0GitHub stars: 16
- Spectral Peak Filtering And NormalizationUse when working with raw or minimally processed MS/MS spectra from repositoriesVotes: 0GitHub stars: 16
- Spectral Peak Filtering By Mass AccuracyUse when after molecular formula assignment has been performed on FT-ICRVotes: 0GitHub stars: 16
- Spectral Peak Filtering By Quality ThresholdUse when you have raw or annotated MS/MS spectra (in MGF, mzML, or mzXMLVotes: 0GitHub stars: 16
- Spectral Peak FilteringUse when you have imported raw mass spectrometry data in formats suchVotes: 0GitHub stars: 16
- Spectral Peak Fitting GaussianUse when you have 1D MS signal data (extracted ion chromatograms, arrivalVotes: 0GitHub stars: 16
- Spectral Peak Fragment MatchingUse when you have MS/MS spectral data (mzML, mzXML format) and a parentVotes: 0GitHub stars: 16
- Spectral Peak Frequency Threshold Optimization'Use when you have MS/MS spectra with fragment frequency annotationsVotes: 0GitHub stars: 16
- Spectral Peak Grouping Mass ToleranceUse when after extracting raw MS/MS spectra from mzML files when youVotes: 0GitHub stars: 16
- Spectral Peak Intensity AggregationUse when you have multiple replicate MS/MS spectra for the same metabolicVotes: 0GitHub stars: 16
- Spectral Peak Intensity InterpretationUse when you have a molecular structure (SMILES, InChI, or chemical formula)Votes: 0GitHub stars: 16
- Spectral Peak Intensity NormalizationUse when after loading raw m/z peak data (in MetaboAnalyst, MetaboShinyVotes: 0GitHub stars: 16
- Spectral Peak Intensity ScalingUse when after filtering and noise removal when you have a cleaned spectrumVotes: 0GitHub stars: 16
- Spectral Peak Matching With ToleranceUse when when comparing a query MS/MS spectrum (e.g., from an unknownVotes: 0GitHub stars: 16
- Spectral Peak Network GroupingUse when after peak picking has been completed on INADEQUATE NMR spectraVotes: 0GitHub stars: 16
- Spectral Peak NormalizationUse when when preparing query spectra and library spectra for similarity-basedVotes: 0GitHub stars: 16