Claude Skills by HolobiomicsLab

Use when you have IM-MS lipidomics data with measured CCS values, samples

Use when your lipidomics experiment includes spiked internal lipid standards

Use when after hierarchical fragmentation library matching has produced

Use when you have parsed MRM transition data (m/z values, retention times,

Use when you have acquired full-scan mass spectrometry imaging data (e.g.,

Use when you have N-methyl-derivatized unsaturated sterol lipid structures

Use when after statistical analysis of lipid abundance data has produced

Use when after quantifying ion images in LipidQMap and before exporting

Use when you have an isotope-corrected or raw MSI dataset stored in HDF5

Use when after raw lipidomic and metabolomic data files have been generated

Use when you have MS/MS spectra with initial lipid annotations from spectral

Use when you have an enumerated list of lipid species (identified by

Use when you have defined lipid species (class, chain composition, and

Use when you have experimental tandem MS (MS/MS) spectra from lipid samples

Use when when you have multiple lipid structures (from lipidomics data

Use when you have MS-DIAL lipid identification results (alignment exports

Use when after peak picking (MZmine, XCMS, MS-DIAL, or Compound Discoverer

Use when when you have a list of lipids identified by different database

Use when you have experimental peaklist data (CSV or mzML-derived tables)

Use when you have obtained MobiLipid or a similar IM-MS lipidomics package

Use when you have identified lipid species unique to your experimental

Use when when you have curated or synthesized a set of custom lipid species

Use when when you have a parsed lipid species table (output from LipidSearch

Use when you have peak-picked LC-HRMS/MS or direct infusion MS/MS data

Use when when exporting in-memory generated spectra as MSP-format spectral

Use when you need to generate a comprehensive, non-redundant inventory

Use when you have received raw lipid identification output from LipidSearch

Use when when loading a lipidomics dataset into lipidr and the parsing

Use when you have spatial metabolomics data with semicolon-delimited

Use when you have lipid names or abbreviations sourced from multiple

Use when you have a list of detected lipids (e.g., from LC-MS/MS lipidomics

Use when you have candidate lipid annotations from spectral library matching

Use when after normalizing and log-transforming lipidomics intensity

Use when after completing two-group or multi-group differential expression

Use when you have two or more lipid structures (represented as molecular

Use when you have access to a lipidomics library repository (e.g., LipidMatch

Use when after running MetaboAnnotatoR's annotateRC function when you

Use when you have a table of lipid species names or identifiers output

Use when you have centroid-mode LC–MS AIF chromatograms processed by

Use when after generating a complete lipid spectral library with adduct-specific

Use when you have identified lipid species unique to your sample type

Use when when you have downloaded or cloned a lipidomics library repository

Use when when you have quantitative lipidomics data (either from Skyline

Use when when you have lipidomics quantitation data (lipid abundances

Use when you have raw LC-HRMS profile-mode data and need to identify

Use when you need to determine which sequence files in a repository like

Use when you have raw LA-ICP-MS image data containing potential spike

Use when you have a large collection of mass spectrometry spectra (m/z

Use when your metabolomics SummarizedExperiment object shows signal drift

Use when when you have completed differential expression analysis (via