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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Spectrum Preprocessing Binning NormalizationUse when when preparing raw MS/MS spectra for input to a Siamese neuralVotes: 0GitHub stars: 16
- Spectrum Preprocessing For Similarity AnalysisUse when when you have raw MS/MS spectra with residual noise or low-intensityVotes: 0GitHub stars: 16
- Spectrum Preprocessing Precursor MaskingUse when when training a formula-prediction model with a frozen pretrainedVotes: 0GitHub stars: 16
- Spectrum Processing Pipeline ConstructionUse when you have raw mass spectrometry spectra (in MGF, mzML, or similarVotes: 0GitHub stars: 16
- Spectrum Processing Throughput BenchmarkingUse when when selecting a spectrum processing library for high-throughputVotes: 0GitHub stars: 16
- Spectrum Query FormattingUse when you have parsed LC-MS/MS spectral data (precursor m/z, ionizationVotes: 0GitHub stars: 16
- Spectrum Random Access Retrieval Via Bracket NotationUse when when you need to retrieve specific spectra from mzML files byVotes: 0GitHub stars: 16
- Spectrum Record Consistency ValidationUse when when you have a mass spectrometry data file (such as mzPeak)Votes: 0GitHub stars: 16
- Spectrum Relevance ClassificationUse when you have a collection of MS/MS spectra from reference standardsVotes: 0GitHub stars: 16
- Spectrum Similarity Nearest Neighbor IndexingUse when when you have thousands to millions of high-resolution tandemVotes: 0GitHub stars: 16
- Spectrum Similarity Scoring'Use when you have an unknown MS/MS spectrum (query spectrum with m/zVotes: 0GitHub stars: 16
- Spectrum Subset ExtractionUse when after duplicate filtering of MZmine-exported MGF and CSV files,Votes: 0GitHub stars: 16
- Spectrum Subsetting And MergingUse when when you have a large MsBackend object and need to (1) selectVotes: 0GitHub stars: 16
- Spectrum Tokenization For NlpUse when when you have raw mass spectra from experimental libraries (e.Votes: 0GitHub stars: 16
- Spectrum Vector SerializationUse when after successfully constructing a nearest neighbor index fromVotes: 0GitHub stars: 16
- Spectrum Vector Similarity SearchingUse when when clustering large collections (thousands to millions) ofVotes: 0GitHub stars: 16
- Spectrum Visualization And Figure RenderingUse when when you have a processed or annotated MsmsSpectrum object (fromVotes: 0GitHub stars: 16
- Sphinx Gallery Execution And Performance ProfilingUse when you have a Sphinx-based documentation project with multipleVotes: 0GitHub stars: 16
- Spike Artifact Detection And RemovalUse when processing raw IM-MS data (Agilent MassHunter .d or UIMF format)Votes: 0GitHub stars: 16
- Spot Level Intensity AggregationUse when after loading spatial metabolomics data (from CSV, imzML, orVotes: 0GitHub stars: 16
- Sql Query Optimization For Similarity SearchUse when when migrating spectral library data from file-based formatsVotes: 0GitHub stars: 16
- Sqlite Database Design And Schema CreationUse when you have an mzML file and need to enable random-access spectrumVotes: 0GitHub stars: 16
- Sqlite Query Execution And Cursor ManagementUse when you have mass spectrometry data stored in a SQLite databaseVotes: 0GitHub stars: 16
- Stable Isotope Labeling ProteomicsUse when when you have mass spectrometry data (MS1/MS2 scans from ThermoFisherVotes: 0GitHub stars: 16
- Stable Isotope Labeling QuantificationUse when you have centroided high-resolution Orbitrap mzML files fromVotes: 0GitHub stars: 16
- Stable Isotope Labelling Feature DetectionUse when you have XCMS-processed LC/MS peak tables from paired unlabeledVotes: 0GitHub stars: 16
- Stable Isotope Probing Abundance ModelingUse when you have a high-resolution mass spectrum (FT scan) containingVotes: 0GitHub stars: 16
- Standalone Web Application DeploymentUse when you have cloned the GNPS_MASST codebase and need to instantiateVotes: 0GitHub stars: 16
- Standardized Region Export For Deep LearningUse when you have LC-HRMS profile-mode data with detected local maximaVotes: 0GitHub stars: 16
- Statistical Distribution Analysis Across CohortsUse when when you have prediction scores (softmax probabilities, uncertainties)Votes: 0GitHub stars: 16
- Statistical Enrichment AnalysisUse when you have ranked GCF-MF (Gene Cluster Family–Molecular Family)Votes: 0GitHub stars: 16
- Statistical Filtering Metabolite FeaturesUse when when you have peak area tables (unlabeled C12 and labeled C13)Votes: 0GitHub stars: 16
- Statistical Hypothesis Testing BiologyUse when you have a metabolite abundance table (rows=metabolites, columns=samples)Votes: 0GitHub stars: 16
- Statistical Hypothesis Testing Mean ComparisonUse when you have computed raw or standardised correlation scores (orVotes: 0GitHub stars: 16
- Statistical Result Interpretation And PlottingUse when after statistical analysis has produced a results table withVotes: 0GitHub stars: 16
- Statistical Result ReproductionUse when you have downloaded a Jupyter notebook from a published metabolomicsVotes: 0GitHub stars: 16
- Statistical Significance Estimation Mass SpectrometryUse when after aligning fragment ions between two tandem mass spectraVotes: 0GitHub stars: 16
- Statistical Significance Testing P Value CalculationUse when after standardizing link scores (strain correlation and IOKR)Votes: 0GitHub stars: 16
- Statistical Significance TestingUse when when you have computed rank-based accuracy metrics (top-1, top-5,Votes: 0GitHub stars: 16
- Statistical Visualization Multi GroupUse when when you have loaded search results from two or more DIA-MSVotes: 0GitHub stars: 16
- Sterol Isomer ClassificationUse when you have LC-IM-MS/MS raw data from sterol-containing tissueVotes: 0GitHub stars: 16
- Sterol Lipid Isomer CharacterizationUse when you have LC-IM-MS/MS experimental data (raw mzML or vendor format)Votes: 0GitHub stars: 16
- Sterol Structure Representation And CurationUse when when you have a collection of N-Me derivatized unsaturated sterolVotes: 0GitHub stars: 16
- Stocsy Metabolite AssignmentUse when use STOCSY when you have preprocessed 1H NMR spectral data withVotes: 0GitHub stars: 16
- Storage Origin Metadata AssignmentUse when when implementing or initializing an MsBackend subclass to handleVotes: 0GitHub stars: 16
- Strain Identifier Mapping Across Genomics MetabolomicsUse when when preparing multiomics datasets for NPLinker that combineVotes: 0GitHub stars: 16
- Strain Spectrum Mapping LinkageUse when when you have downloaded and extracted a GNPS archive (fromVotes: 0GitHub stars: 16
- Structural Annotation IntegrationUse when you have structural candidates from in silico tools (SIRIUS/CANOPUS)Votes: 0GitHub stars: 16
- Structural Cluster Annotation MetabolomicsUse when after identifying statistically significant LC-MS features (e.g.,Votes: 0GitHub stars: 16
- Structural Cluster Network ConstructionUse when after you have identified statistically significant LC-MS featuresVotes: 0GitHub stars: 16