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Claude Skills by HolobiomicsLab
github.com/HolobiomicsLab4,372 skills13 installs12,718 views
- Taxonomy Metadata ExtractionUse when you have executed a spectrum search against one or more domain-specificVotes: 0GitHub stars: 16
- Taxonomy String NormalizationUse when when preparing a metadata table (TSV format with species, genus,Votes: 0GitHub stars: 16
- Tcn Encoder Input PreprocessingUse when when reproducing or auditing FIDDLE's formula prediction pipeline,Votes: 0GitHub stars: 16
- Technical Replicate Reproducibility AssessmentUse when you have tandem MS data with technical replicates and need toVotes: 0GitHub stars: 16
- Technical Replicate Signal ModelingUse when your LCMS metabolomics dataset exhibits run-order-dependentVotes: 0GitHub stars: 16
- Technical Specification TabulationUse when when you need to verify whether a specific mass spectrometryVotes: 0GitHub stars: 16
- Technical Variation Removal In Lcms DataUse when after merging feature tables from non-targeted LC-MS/MS dataVotes: 0GitHub stars: 16
- Temporal Profile Correlation AnalysisUse when you have time-resolved direct injection mass spectrometry dataVotes: 0GitHub stars: 16
- Temporal Signal Drift Detection And AdjustmentUse when raw MS quantification data (feature-by-sample intensity matrix)Votes: 0GitHub stars: 16
- Tensor Dimension Alignment And BroadcastingUse when when implementing a multi-task deep learning model that predictsVotes: 0GitHub stars: 16
- Tensor Operation Element Wise ProductUse when you have two embedding tensors of identical shape (e.g., bothVotes: 0GitHub stars: 16
- Tensor Preprocessing NormalizationUse when when you have raw MS/MS spectral data in the form of intensityVotes: 0GitHub stars: 16
- Tensorflow Cpu Runtime Parameter TuningUse when deploying Mass2SMILES on a TensorFlow-CPU build and you needVotes: 0GitHub stars: 16
- Tensorflow Serving Endpoint IntegrationUse when you have nuclear magnetic resonance (NMR) peak data (1H andVotes: 0GitHub stars: 16
- Test Driven Database DevelopmentUse when when you have an existing tool or library with file-based storageVotes: 0GitHub stars: 16
- Theoretical Fragment Ion GenerationUse when when you have a peptide sequence and need to predict its fragmentVotes: 0GitHub stars: 16
- Theoretical Isotope Envelope CalculationUse when when processing mass spectrometry data from stable isotope probingVotes: 0GitHub stars: 16
- Theoretical Mz Grid GenerationUse when you have a feature table from untargeted LC-MS (m/z, retentionVotes: 0GitHub stars: 16
- Theoretical Spectrum GenerationUse when you have a defined set of lipid species (identified by classVotes: 0GitHub stars: 16
- Theoretical To Observed Peak MatchingUse when you have a mass spectrum scan containing observed precursorVotes: 0GitHub stars: 16
- Thermo Fisher Orbitrap Metadata InterpretationUse when when you have a Thermo Fisher Scientific .Votes: 0GitHub stars: 16
- Thermo Raw Binary Data ExtractionUse when you have acquired .raw files from a Thermo mass spectrometerVotes: 0GitHub stars: 16
- Thermo Raw File Format ParsingUse when you have acquired multidimensional mass spectrometry data (MS1,Votes: 0GitHub stars: 16
- Thermo Raw Format ParsingUse when when you have LC-MS data in Thermo .raw format (a proprietaryVotes: 0GitHub stars: 16
- Thermodynamic Index CalculationUse when after molecular formula assignment and filtering of FT-ICR MSVotes: 0GitHub stars: 16
- Thermodynamic Molecular Index Calculation From Elemental Composition'Use when when you have peak-abundance .csv files with assigned molecularVotes: 0GitHub stars: 16
- Third Party Processor IntegrationUse when when you have raw MS files (e.g., .raw, vendor-specific formats)Votes: 0GitHub stars: 16
- Thread Utilization Profiling And ValidationUse when when deploying Mass2SMILES inference on CPU-only hardware (e.g.,Votes: 0GitHub stars: 16
- Threshold Based FilteringUse when after computing pairwise similarity scores between query molecularVotes: 0GitHub stars: 16
- Threshold Based Library ValidationUse when you have downloaded or cloned a fragmentation library repositoryVotes: 0GitHub stars: 16
- Threshold Based Sample ClassificationUse when after normalization (step 7) in untargeted metabolomic profilingVotes: 0GitHub stars: 16
- Throughput Optimization Ms QueryingUse when you have experimental MS/MS spectra that must be matched againstVotes: 0GitHub stars: 16
- Tic Based Intensity ScalingUse when after feature detection when you have a metabolomics featureVotes: 0GitHub stars: 16
- Tic Peak Boundary EstimationUse when after sliding-window analysis has identified candidate TIC peaksVotes: 0GitHub stars: 16
- Tic Peak Identification Sliding WindowUse when you have loaded raw mass spectrometry data (mzML, mzXML, orVotes: 0GitHub stars: 16
- Tic Peak Isolation ValidationUse when you have raw mass spectrometry data (mzML, mzXML, or CDF format)Votes: 0GitHub stars: 16
- Time And Memory Complexity VisualizationUse when when deploying a metabolomics processing tool (such as asari)Votes: 0GitHub stars: 16
- Time Domain Signal ApodizationUse when working with raw FT-ICR transient data (e.g., ESI_NEG_SRFA.dVotes: 0GitHub stars: 16
- Time Resolved Dbdi Data InterpretationUse when you have time-resolved DBDI-MS data (intensity matrix with m/zVotes: 0GitHub stars: 16
- Time Series Intensity NormalizationUse when when LCMS metabolomics abundance tables show systematic intensityVotes: 0GitHub stars: 16
- Tissue Spatial Analysis Pipeline ExecutionUse when you have raw IMC (protein imaging) and SIMS (metabolite imaging)Votes: 0GitHub stars: 16
- Tissue Specific Metabolite QuantificationUse when you have LC-IM-MS/MS raw data from multiple tissue samples andVotes: 0GitHub stars: 16
- Tof Ms Signal Enhancement Low AbundanceUse when your raw TOF-MS data (Agilent MassHunter .d format) exhibitsVotes: 0GitHub stars: 16
- Tomcat Application Server InitializationUse when when you need to deploy a Java web application packaged in aVotes: 0GitHub stars: 16
- Toml Configuration File PreparationUse when you have exported lipid identifications from MS-DIAL (versionVotes: 0GitHub stars: 16
- Tool Initialization VerificationUse when after completing Docker installation and container build stepsVotes: 0GitHub stars: 16
- Tool Xml Wrapper IntegrationUse when you have standalone metabolomics analysis tools (Python scripts,Votes: 0GitHub stars: 16
- Top K Accuracy Ranking And EvaluationUse when a machine learning model produces multiple ranked predictionsVotes: 0GitHub stars: 16
- Top K Retrieval Ranking EvaluationUse when when you have deployed a trained embedding or similarity modelVotes: 0GitHub stars: 16
- Top N Accuracy And Auc Metric CalculationUse when you have a ranked candidate list (e.g., BGCs sorted by IOKRVotes: 0GitHub stars: 16